RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 MPP3Q13368 585 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 CCDC158Q5M9N0 1113 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 ANKRD45Q5TZF3 282 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 EMC10Q5UCC4 262 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 GIMAP6Q6P9H5 292 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 SLC30A9Q6PML9 568 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 LRRC31Q6UY01 552 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 DAAM2Q86T65 1068 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 LURAP1LQ8IV03 231 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 BRSK2Q8IWQ3 736 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 RPAP2Q8IXW5 612 aaPredicted RBP6.13□□□□□ -1.43
CD44-236ENST00000533222 LRRC47Q8N1G4 583 aaKnown RBP6.13□□□□□ -1.43
CD44-236ENST00000533222 TTC30BQ8N4P2 665 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 CRACR2BQ8N4Y2 399 aaPredicted RBP6.13□□□□□ -1.43
CD44-236ENST00000533222 TTC39CQ8N584 583 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 ARL6IP6Q8N6S5 226 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 NAT16Q8N8M0 369 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 TMEM145Q8NBT3 493 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 ACMSDQ8TDX5 336 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 COPS5Q92905 334 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 OSBP2Q969R2 916 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 C1orf159Q96HA4 380 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 CDHR1Q96JP9 859 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 EXOC2Q96KP1 924 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 FCRL2Q96LA5 508 aaPredicted RBP6.13□□□□□ -1.43
CD44-236ENST00000533222 PTCHD1Q96NR3 888 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 SIN3AQ96ST3 1273 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 UPF3BQ9BZI7 483 aaKnown RBP6.13□□□□□ -1.43
CD44-236ENST00000533222 C19orf44Q9H6X5 657 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 DCAF16Q9NXF7 216 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 CLEC1BQ9P126 229 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 ADGRE2Q9UHX3 823 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 XPO7Q9UIA9 1087 aaKnown RBP6.13□□□□□ -1.43
CD44-236ENST00000533222 LCMT1Q9UIC8 334 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 TMEFF2Q9UIK5 374 aaPredicted RBP6.13□□□□□ -1.43
CD44-236ENST00000533222 CTNND2Q9UQB3 1225 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 ZNF148Q9UQR1 794 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 ZNF510Q9Y2H8 683 aa6.13□□□□□ -1.43
CD44-236ENST00000533222 NOSIPQ9Y314 301 aaKnown RBP6.13□□□□□ -1.43
CD44-236ENST00000533222 MRPL42Q9Y6G3 142 aaKnown RBP6.13□□□□□ -1.43
CD44-236ENST00000533222 IQCA1LA6NCM1 817 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 LSM1O15116 133 aaKnown RBP6.12□□□□□ -1.43
CD44-236ENST00000533222 BIRC5O15392 142 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 DLX3O60479 287 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 TROVE2P10155 538 aaKnown RBP eCLIP6.12□□□□□ -1.43
CD44-236ENST00000533222 PLS3P13797 630 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 DESP17661 470 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 ENPP1P22413 925 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 L1CAMP32004 1257 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 SLC8A1P32418 973 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 ARPC4P59998 168 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 TUBA1BP68363 451 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 POU5F1BQ06416 359 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 MAPRE1Q15691 268 aaKnown RBP6.12□□□□□ -1.43
CD44-236ENST00000533222 INAQ16352 499 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 INF2Q27J81 1249 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 FAM209AQ5JX71 171 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 SH2D4BQ5SQS7 431 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 FYB2Q5VWT5 728 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 NXNQ6DKJ4 435 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 TUBA1AQ71U36 451 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 CBLL1Q75N03 491 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 YTHDF3Q7Z739 585 aaKnown RBP6.12□□□□□ -1.43
CD44-236ENST00000533222 CPNE8Q86YQ8 564 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 CCDC103Q8IW40 242 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 SAMD14Q8IZD0 417 aaPredicted RBP6.12□□□□□ -1.43
CD44-236ENST00000533222 KREMEN2Q8NCW0 462 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 SVIPQ8NHG7 77 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 GABPB2Q8TAK5 448 aaPredicted RBP6.12□□□□□ -1.43
CD44-236ENST00000533222 NPLOC4Q8TAT6 608 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 KAT6BQ8WYB5 2073 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 N4BP2L2Q92802 583 aaPredicted RBP6.12□□□□□ -1.43
CD44-236ENST00000533222 CUL5Q93034 780 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 ZNF669Q96BR6 464 aaPredicted RBP6.12□□□□□ -1.43
CD44-236ENST00000533222 RBM41Q96IZ5 413 aaKnown RBP6.12□□□□□ -1.43
CD44-236ENST00000533222 C8orf76Q96K31 380 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 CGREF1Q99674 301 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 NAP1L4Q99733 375 aaKnown RBP6.12□□□□□ -1.43
CD44-236ENST00000533222 TCHPQ9BT92 498 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 TCF7L2Q9NQB0 619 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 CYP26B1Q9NR63 512 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 KIF15Q9NS87 1388 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 IFT57Q9NWB7 429 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 MAP3K20Q9NYL2 800 aaKnown RBP6.12□□□□□ -1.43
CD44-236ENST00000533222 RABL2AQ9UBK7 228 aaPredicted RBP6.12□□□□□ -1.43
CD44-236ENST00000533222 RCAN3Q9UKA8 241 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 CORO1CQ9ULV4 474 aaPredicted RBP6.12□□□□□ -1.43
CD44-236ENST00000533222 DAAM1Q9Y4D1 1078 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 N6AMT1Q9Y5N5 214 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 PTCH2Q9Y6C5 1203 aa6.12□□□□□ -1.43
CD44-236ENST00000533222 NPATQ14207 1427 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 TRAV20A0A0B4J274 112 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 FADS2P1A8MWK0 482 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 POLR3GO15318 223 aaPredicted RBP6.11□□□□□ -1.43
CD44-236ENST00000533222 NEMFO60524 1076 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 DIAPH2O60879 1101 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 TBCAO75347 108 aaKnown RBP6.11□□□□□ -1.43
CD44-236ENST00000533222 PNMA6AP0CW24 399 aaPredicted RBP6.11□□□□□ -1.43
CD44-236ENST00000533222 CCDC166P0CW27 439 aa6.11□□□□□ -1.43
CD44-236ENST00000533222 PABPC1P11940 636 aaKnown RBP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms