RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 XPNPEP1Q9NQW7 623 aa16.77■□□□□ 0.28
CPSF1-208ENST00000532560 SUCLA2Q9P2R7 463 aaPredicted RBP16.77■□□□□ 0.28
CPSF1-208ENST00000532560 COL4A6Q14031 1691 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 GPR182O15218 404 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 TLL1O43897 1013 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 DARSP14868 501 aaKnown RBP16.76■□□□□ 0.27
CPSF1-208ENST00000532560 EIF4BP23588 611 aaKnown RBP16.76■□□□□ 0.27
CPSF1-208ENST00000532560 SF3A1Q15459 793 aaKnown RBP16.76■□□□□ 0.27
CPSF1-208ENST00000532560 KRT79Q5XKE5 535 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 TMCO2Q7Z6W1 182 aaPredicted RBP16.76■□□□□ 0.27
CPSF1-208ENST00000532560 SNX29Q8TEQ0 813 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 NLRP7Q8WX94 980 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 PSPC1Q8WXF1 523 aaKnown RBP16.76■□□□□ 0.27
CPSF1-208ENST00000532560 TOP1MTQ969P6 601 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 SCLT1Q96NL6 688 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 NKX2-4Q9H2Z4 354 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 SEMA6BQ9H3T3 888 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 ZNF576Q9H609 170 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 MTMR10Q9NXD2 777 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 COL4A3BPQ9Y5P4 624 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 SZT2Q5T011 3432 aa16.76■□□□□ 0.27
CPSF1-208ENST00000532560 VWA3AA6NCI4 1184 aa16.75■□□□□ 0.27
CPSF1-208ENST00000532560 PP2D1A8MPX8 630 aa16.75■□□□□ 0.27
CPSF1-208ENST00000532560 ENPP3O14638 875 aa16.75■□□□□ 0.27
CPSF1-208ENST00000532560 MYOGP15173 224 aa16.75■□□□□ 0.27
CPSF1-208ENST00000532560 NFX1Q12986 1120 aaKnown RBP16.75■□□□□ 0.27
CPSF1-208ENST00000532560 RHPN2Q8IUC4 686 aa16.75■□□□□ 0.27
CPSF1-208ENST00000532560 TMEM143Q96AN5 459 aa16.75■□□□□ 0.27
CPSF1-208ENST00000532560 RAD9AQ99638 391 aa16.75■□□□□ 0.27
CPSF1-208ENST00000532560 ZBED2Q9BTP6 218 aa16.75■□□□□ 0.27
CPSF1-208ENST00000532560 MMTAG2Q9BU76 263 aaKnown RBP16.75■□□□□ 0.27
CPSF1-208ENST00000532560 GCOM2Q9BZD3 368 aaPredicted RBP16.75■□□□□ 0.27
CPSF1-208ENST00000532560 BMP2KQ9NSY1 1161 aaPredicted RBP16.75■□□□□ 0.27
CPSF1-208ENST00000532560 ST3GAL5Q9UNP4 418 aa16.75■□□□□ 0.27
CPSF1-208ENST00000532560 TTC3P53804 2025 aa16.74■□□□□ 0.27
CPSF1-208ENST00000532560 CA3P07451 260 aa16.74■□□□□ 0.27
CPSF1-208ENST00000532560 HTRA4P83105 476 aaPredicted RBP16.74■□□□□ 0.27
CPSF1-208ENST00000532560 ECM1Q16610 540 aa16.74■□□□□ 0.27
CPSF1-208ENST00000532560 PPP2R2DQ66LE6 453 aa16.74■□□□□ 0.27
CPSF1-208ENST00000532560 PRPF31Q8WWY3 499 aaKnown RBP16.74■□□□□ 0.27
CPSF1-208ENST00000532560 ZNF668Q96K58 619 aaPredicted RBP16.74■□□□□ 0.27
CPSF1-208ENST00000532560 AK8Q96MA6 479 aa16.74■□□□□ 0.27
CPSF1-208ENST00000532560 NLRP4Q96MN2 994 aa16.74■□□□□ 0.27
CPSF1-208ENST00000532560 SLC28A3Q9HAS3 691 aa16.74■□□□□ 0.27
CPSF1-208ENST00000532560 MYH15Q9Y2K3 1946 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 A0A087WWV3 80 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 A0A087WZ62 844 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 ASAP2O43150 1006 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 SLC26A4O43511 780 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 MGEA5O60502 916 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 USO1O60763 962 aaKnown RBP16.73■□□□□ 0.27
CPSF1-208ENST00000532560 LAMTOR4Q0VGL1 99 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 MXD4Q14582 209 aaPredicted RBP16.73■□□□□ 0.27
CPSF1-208ENST00000532560 PTPAQ15257 358 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 HYIQ5T013 277 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 RTN4RL1Q86UN2 441 aaPredicted RBP16.73■□□□□ 0.27
CPSF1-208ENST00000532560 MCPH1Q8NEM0 835 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 FAM161BQ96MY7 647 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 GUCD1Q96NT3 240 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 FDXACB1Q9BRP7 624 aaPredicted RBP16.73■□□□□ 0.27
CPSF1-208ENST00000532560 INO80BQ9C086 356 aaPredicted RBP16.73■□□□□ 0.27
CPSF1-208ENST00000532560 C1orf112Q9NSG2 853 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 DDX19AQ9NUU7 478 aaKnown RBP16.73■□□□□ 0.27
CPSF1-208ENST00000532560 KIAA1024Q9UPX6 916 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 INSL6Q9Y581 213 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 CLIC4Q9Y696 253 aa16.73■□□□□ 0.27
CPSF1-208ENST00000532560 MORC2Q9Y6X9 1032 aaPredicted RBP16.73■□□□□ 0.27
CPSF1-208ENST00000532560 DENND3A2RUS2 1198 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 ARHGEF35A5YM69 484 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 SFPQP23246 707 aaKnown RBP eCLIP16.72■□□□□ 0.27
CPSF1-208ENST00000532560 CDC25AP30304 524 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 ARL2P36404 184 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 TAP1Q03518 808 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 DSC3Q14574 896 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 FAM117BQ6P1L5 589 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 FAM173BQ6P4H8 233 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 PADI6Q6TGC4 694 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 NPAS4Q8IUM7 802 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 KSR1Q8IVT5 923 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 CRIPAKQ8N1N5 446 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 KCTD17Q8N5Z5 321 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 SP7Q8TDD2 431 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-208ENST00000532560 RC3H2Q9HBD1 1191 aaKnown RBP16.72■□□□□ 0.27
CPSF1-208ENST00000532560 IFT122Q9HBG6 1241 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 RGS18Q9NS28 235 aa16.72■□□□□ 0.27
CPSF1-208ENST00000532560 CHD9Q3L8U1 2897 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 LCHNA4D1U4 455 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 ARHGEF15O94989 841 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 UPP2O95045 317 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 EYA4O95677 639 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 ZSCAN22P10073 491 aaPredicted RBP16.71■□□□□ 0.27
CPSF1-208ENST00000532560 LONP1P36776 959 aaKnown RBP16.71■□□□□ 0.27
CPSF1-208ENST00000532560 SARSP49591 514 aaKnown RBP16.71■□□□□ 0.27
CPSF1-208ENST00000532560 POU5F1BQ06416 359 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 TFDP1Q14186 410 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 SRGAP1Q7Z6B7 1085 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 RNF149Q8NC42 400 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 SPRYD3Q8NCJ5 442 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 ASAP3Q8TDY4 903 aa16.71■□□□□ 0.27
CPSF1-208ENST00000532560 USP28Q96RU2 1077 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms