RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CYP26B1Q9NR63 512 aa11.96□□□□□ -0.49
CD44-227ENST00000528086 RGS18Q9NS28 235 aa11.96□□□□□ -0.49
CD44-227ENST00000528086 AKT3Q9Y243 479 aa11.96□□□□□ -0.49
CD44-227ENST00000528086 MRPL42Q9Y6G3 142 aaKnown RBP11.96□□□□□ -0.49
CD44-227ENST00000528086 C5orf42Q9H799 3197 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 NCOR1O75376 2440 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 A0A087WZ62 844 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 C5orf67F2Z3F1 127 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 NEMFO60524 1076 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 LYPLA2O95372 231 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 EIF4BP23588 611 aaKnown RBP11.95□□□□□ -0.5
CD44-227ENST00000528086 DNAJB1P25685 340 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 TXKP42681 527 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 SARSP49591 514 aaKnown RBP11.95□□□□□ -0.5
CD44-227ENST00000528086 HMGN5P82970 282 aaKnown RBP11.95□□□□□ -0.5
CD44-227ENST00000528086 ZNF598Q86UK7 904 aaKnown RBP11.95□□□□□ -0.5
CD44-227ENST00000528086 NPAS4Q8IUM7 802 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 SLFN12Q8IYM2 578 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 FDXACB1Q9BRP7 624 aaPredicted RBP11.95□□□□□ -0.5
CD44-227ENST00000528086 FTHL17Q9BXU8 183 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 MINDY3Q9H8M7 445 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 BMP2KQ9NSY1 1161 aaPredicted RBP11.95□□□□□ -0.5
CD44-227ENST00000528086 TCEAL9Q9UHQ7 104 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 PCDHA12Q9UN75 941 aa11.95□□□□□ -0.5
CD44-227ENST00000528086 H3BNC9 293 aa11.94□□□□□ -0.5
CD44-227ENST00000528086 M0QZ92 97 aa11.94□□□□□ -0.5
CD44-227ENST00000528086 GRM6O15303 877 aa11.94□□□□□ -0.5
CD44-227ENST00000528086 MED24O75448 989 aa11.94□□□□□ -0.5
CD44-227ENST00000528086 FGFR1P11362 822 aa11.94□□□□□ -0.5
CD44-227ENST00000528086 YWHABP31946 246 aaKnown RBP11.94□□□□□ -0.5
CD44-227ENST00000528086 BMPR1AP36894 532 aa11.94□□□□□ -0.5
CD44-227ENST00000528086 LRRC55Q6ZSA7 311 aa11.94□□□□□ -0.5
CD44-227ENST00000528086 NOSTRINQ8IVI9 506 aa11.94□□□□□ -0.5
CD44-227ENST00000528086 MICALL1Q8N3F8 863 aa11.94□□□□□ -0.5
CD44-227ENST00000528086 FBXO22Q8NEZ5 403 aa11.94□□□□□ -0.5
CD44-227ENST00000528086 TMEM143Q96AN5 459 aa11.94□□□□□ -0.5
CD44-227ENST00000528086 NAP1L4Q99733 375 aaKnown RBP11.94□□□□□ -0.5
CD44-227ENST00000528086 BRMS1Q9HCU9 246 aa11.94□□□□□ -0.5
CD44-227ENST00000528086 SUCLA2Q9P2R7 463 aaPredicted RBP11.94□□□□□ -0.5
CD44-227ENST00000528086 PCDHB6Q9Y5E3 794 aa11.94□□□□□ -0.5
CD44-227ENST00000528086 MEIS3P2A8K0S8 358 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 DLL1O00548 723 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 GPR182O15218 404 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 TRIM29Q14134 588 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 PAN2Q504Q3 1202 aaKnown RBP11.93□□□□□ -0.5
CD44-227ENST00000528086 CLLU1OSQ5K130 101 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 SLC24A5Q71RS6 500 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 CATSPER3Q86XQ3 398 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 TPH2Q8IWU9 490 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 CMTR2Q8IYT2 770 aaKnown RBP11.93□□□□□ -0.5
CD44-227ENST00000528086 FIBCD1Q8N539 461 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 PIGOQ8TEQ8 1089 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 PRPF31Q8WWY3 499 aaKnown RBP11.93□□□□□ -0.5
CD44-227ENST00000528086 CEP170P1Q96L14 293 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 MAP7D2Q96T17 732 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 CWH43Q9H720 699 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 ZSWIM4Q9H7M6 989 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 LMCD1Q9NZU5 365 aa11.93□□□□□ -0.5
CD44-227ENST00000528086 TMOD1P28289 359 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 GJB2P29033 226 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 TECP42680 631 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 RARRES1P49788 294 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 GPM6BQ13491 265 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 CUL4AQ13619 759 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 BTG3Q14201 252 aaPredicted RBP11.92□□□□□ -0.5
CD44-227ENST00000528086 COL19A1Q14993 1142 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 EMC2Q15006 297 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 TTC38Q5R3I4 469 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 ECHDC2Q86YB7 292 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 RHPN2Q8IUC4 686 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 ASAP3Q8TDY4 903 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 MRPL38Q96DV4 380 aaKnown RBP11.92□□□□□ -0.5
CD44-227ENST00000528086 CASD1Q96PB1 797 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 PCDHGC5Q9Y5F6 944 aa11.92□□□□□ -0.5
CD44-227ENST00000528086 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.91□□□□□ -0.5
CD44-227ENST00000528086 PP2D1A8MPX8 630 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 B4GALT3O60512 393 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 BAG4O95429 457 aaKnown RBP11.91□□□□□ -0.5
CD44-227ENST00000528086 ITGB1P05556 798 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 OR52Z1P0C646 297 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 BMP1P13497 986 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 IBSPP21815 317 aaPredicted RBP11.91□□□□□ -0.5
CD44-227ENST00000528086 HOXA11P31270 313 aaPredicted RBP11.91□□□□□ -0.5
CD44-227ENST00000528086 CTNNB1P35222 781 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 ARL2P36404 184 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 KCNQ1P51787 676 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 LAMTOR4Q0VGL1 99 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 SAFBQ15424 915 aaKnown RBP eCLIP11.91□□□□□ -0.5
CD44-227ENST00000528086 XKR9Q5GH70 373 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 UBXN11Q5T124 520 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 FERMT3Q86UX7 667 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 SPPL3Q8TCT6 385 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 NLRP7Q8WX94 980 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 SAMD11Q96NU1 681 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 ASB2Q96Q27 587 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 MMTAG2Q9BU76 263 aaKnown RBP11.91□□□□□ -0.5
CD44-227ENST00000528086 ELAC1Q9H777 363 aaKnown RBP11.91□□□□□ -0.5
CD44-227ENST00000528086 ALG13Q9NP73 1137 aaKnown RBP11.91□□□□□ -0.5
CD44-227ENST00000528086 GPRC5CQ9NQ84 441 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms