RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 LRFN2Q9ULH4 789 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 GINS2Q9Y248 185 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 SAMM50Q9Y512 469 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 COL1A2P08123 1366 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 EVPLQ92817 2033 aa11.38□□□□□ -0.59
VPS28-204ENST00000526054 FNDC1Q4ZHG4 1894 aaPredicted RBP11.38□□□□□ -0.59
VPS28-204ENST00000526054 IGKV6D-21A0A0A0MT36 114 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 PRR33A8MZF0 331 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 CHMP2AO43633 222 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 STX6O43752 255 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 HBP1O60381 514 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 TBX10O75333 385 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 PSMD10O75832 226 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 ATG7O95352 703 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 PSAPP07602 524 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 KLRC1P26715 233 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 MCM7P33993 719 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 LTBRP36941 435 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 NFX1Q12986 1120 aaKnown RBP11.37□□□□□ -0.59
VPS28-204ENST00000526054 CLUL1Q15846 466 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 TMEM266Q2M3C6 531 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 CTC1Q2NKJ3 1217 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 PDXDC2PQ6P474 469 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 ABHD15Q6UXT9 468 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 RTN4RL1Q86UN2 441 aaPredicted RBP11.37□□□□□ -0.59
VPS28-204ENST00000526054 CRIPAKQ8N1N5 446 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 RDM1Q8NG50 284 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 ZNF302Q9NR11 478 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 PLAGL2Q9UPG8 496 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 ARIH1Q9Y4X5 557 aaPredicted RBP11.37□□□□□ -0.59
VPS28-204ENST00000526054 PCDHA10Q9Y5I2 948 aa11.37□□□□□ -0.59
VPS28-204ENST00000526054 DENND3A2RUS2 1198 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 WNT7AO00755 349 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 DCXO43602 365 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 RPS6KA5O75582 802 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 ITGB1P05556 798 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 GTF2F1P35269 517 aaKnown RBP eCLIP11.36□□□□□ -0.59
VPS28-204ENST00000526054 SARSP49591 514 aaKnown RBP11.36□□□□□ -0.59
VPS28-204ENST00000526054 NDUFV1P49821 464 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 GATMP50440 423 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 DLX2Q07687 328 aaPredicted RBP11.36□□□□□ -0.59
VPS28-204ENST00000526054 SMAD4Q13485 552 aaKnown RBP11.36□□□□□ -0.59
VPS28-204ENST00000526054 ZNF174Q15697 407 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 CSPP1Q1MSJ5 1256 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 NAALADL2Q58DX5 795 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 MIER3Q7Z3K6 550 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 ADHFE1Q8IWW8 467 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 CKAP2LQ8IYA6 745 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 KLHL23Q8NBE8 558 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 SPRYD3Q8NCJ5 442 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 HAS1Q92839 578 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 GJA10Q969M2 543 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 POP1Q99575 1024 aaKnown RBP11.36□□□□□ -0.59
VPS28-204ENST00000526054 TMX1Q9H3N1 280 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 UNC45AQ9H3U1 944 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 IGFLR1Q9H665 355 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 DISC1Q9NRI5 854 aa11.36□□□□□ -0.59
VPS28-204ENST00000526054 TRIOO75962 3097 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 LINC01565O15544 149 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 MBTPS2O43462 519 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 OR52Z1P0C646 297 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 DNAJB1P25685 340 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 PPP2R5CQ13362 524 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 CAMK1Q14012 370 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 SMAD2Q15796 467 aaKnown RBP11.35□□□□□ -0.59
VPS28-204ENST00000526054 ZNF484Q5JVG2 852 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 ODR4Q5SWX8 454 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 SWSAP1Q6NVH7 229 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 ADGRD2Q7Z7M1 963 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 FERMT3Q86UX7 667 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 POF1BQ8WVV4 589 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 TMEM40Q8WWA1 233 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 PPP1R16BQ96T49 567 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 ERVK-5Q9HDB9 667 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 C1orf112Q9NSG2 853 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 RNF216Q9NWF9 866 aaPredicted RBP11.35□□□□□ -0.59
VPS28-204ENST00000526054 CD207Q9UJ71 328 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 VAV3Q9UKW4 847 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 MTMR6Q9Y217 621 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 NOC2LQ9Y3T9 749 aaKnown RBP11.35□□□□□ -0.59
VPS28-204ENST00000526054 PCDHB7Q9Y5E2 793 aa11.35□□□□□ -0.59
VPS28-204ENST00000526054 C19orf67A6NJJ6 358 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 ZBTB42B2RXF5 422 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 LAD1O00515 517 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 GPR182O15218 404 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 MGEA5O60502 916 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 C22orf31O95567 290 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 BMP15O95972 392 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 IRS1P35568 1242 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 TXKP42681 527 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 TOB1P50616 345 aaPredicted RBP11.34□□□□□ -0.59
VPS28-204ENST00000526054 RESTQ13127 1097 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 NBR1Q14596 966 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 KIZQ2M2Z5 673 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 SPOUT1Q5T280 376 aaKnown RBP11.34□□□□□ -0.59
VPS28-204ENST00000526054 NCAPH2Q6IBW4 605 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 B3GNT9Q6UX72 402 aa11.34□□□□□ -0.59
VPS28-204ENST00000526054 FAM43BQ6ZT52 329 aaPredicted RBP11.34□□□□□ -0.59
VPS28-204ENST00000526054 TRMT1LQ7Z2T5 733 aaKnown RBP11.34□□□□□ -0.59
VPS28-204ENST00000526054 KIAA0319LQ8IZA0 1049 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms