RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 EPHA7Q15375 998 aa15.32■□□□□ 0.04
TCOF1-215ENST00000515516 SAFBQ15424 915 aaKnown RBP eCLIP15.32■□□□□ 0.04
TCOF1-215ENST00000515516 CSPP1Q1MSJ5 1256 aa15.32■□□□□ 0.04
TCOF1-215ENST00000515516 NCAPH2Q6IBW4 605 aa15.32■□□□□ 0.04
TCOF1-215ENST00000515516 OTUD6AQ7L8S5 288 aa15.32■□□□□ 0.04
TCOF1-215ENST00000515516 RHPN2Q8IUC4 686 aa15.32■□□□□ 0.04
TCOF1-215ENST00000515516 KLHL23Q8NBE8 558 aa15.32■□□□□ 0.04
TCOF1-215ENST00000515516 NSUN7Q8NE18 718 aaKnown RBP15.32■□□□□ 0.04
TCOF1-215ENST00000515516 SLC7A3Q8WY07 619 aa15.32■□□□□ 0.04
TCOF1-215ENST00000515516 DACT1Q9NYF0 836 aa15.32■□□□□ 0.04
TCOF1-215ENST00000515516 VAV3Q9UKW4 847 aa15.32■□□□□ 0.04
TCOF1-215ENST00000515516 PPME1Q9Y570 386 aa15.32■□□□□ 0.04
TCOF1-215ENST00000515516 COL4A4P53420 1690 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-215ENST00000515516 TMEM150BA6NC51 233 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 H3BQ06 376 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-215ENST00000515516 MAFO75444 373 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-215ENST00000515516 STBD1O95210 358 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 LARGE1O95461 756 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 SEC24BO95487 1268 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 ITGB1P05556 798 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 FGFR1P11362 822 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 SFPQP23246 707 aaKnown RBP eCLIP15.31■□□□□ 0.04
TCOF1-215ENST00000515516 NR5A1Q13285 461 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 PTCRAQ6ISU1 281 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-215ENST00000515516 ANO5Q75V66 913 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 ZNF410Q86VK4 478 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 POTEDQ86YR6 584 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 THNSL1Q8IYQ7 743 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 RNF169Q8NCN4 708 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-215ENST00000515516 SPPL3Q8TCT6 385 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 MICAL1Q8TDZ2 1067 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 POF1BQ8WVV4 589 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 CEP170P1Q96L14 293 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 SH2D3AQ9BRG2 576 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 TMEM117Q9H0C3 514 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 IGFLR1Q9H665 355 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 CYP26B1Q9NR63 512 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 TYW1Q9NV66 732 aaKnown RBP15.31■□□□□ 0.04
TCOF1-215ENST00000515516 LIMCH1Q9UPQ0 1083 aa15.31■□□□□ 0.04
TCOF1-215ENST00000515516 VCANP13611 3396 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 A0A087WZ62 844 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 IGKV6-21A0A0C4DH24 114 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 JAK2O60674 1132 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 SIP14410 1827 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 LAG3P18627 525 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 FGFR4P22455 802 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 POLGP54098 1239 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-215ENST00000515516 UBE3AQ05086 875 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 DRP2Q13474 957 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 EARS2Q5JPH6 523 aaKnown RBP15.3■□□□□ 0.04
TCOF1-215ENST00000515516 PLA2G4FQ68DD2 849 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 ECHDC2Q86YB7 292 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 DIS3L2Q8IYB7 885 aaKnown RBP15.3■□□□□ 0.04
TCOF1-215ENST00000515516 NEK9Q8TD19 979 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 HAS1Q92839 578 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 NLRP4Q96MN2 994 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 FDXACB1Q9BRP7 624 aaPredicted RBP15.3■□□□□ 0.04
TCOF1-215ENST00000515516 ZSWIM4Q9H7M6 989 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 CHST12Q9NRB3 414 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 PCDHA12Q9UN75 941 aa15.3■□□□□ 0.04
TCOF1-215ENST00000515516 GRXCR2A6NFK2 248 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 BTBD18B2RXH4 712 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 EOMESO95936 686 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 SKIP12755 728 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 YWHABP31946 246 aaKnown RBP15.29■□□□□ 0.04
TCOF1-215ENST00000515516 RFC5P40937 340 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 HYAL1Q12794 435 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 CALCRLQ16602 461 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 TPH2Q8IWU9 490 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 C4orf19Q8IY42 314 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 COLGALT1Q8NBJ5 622 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 DYDC2Q96IM9 177 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 CEP89Q96ST8 783 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 LXNQ9BS40 222 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 PUF60Q9UHX1 559 aaKnown RBP15.29■□□□□ 0.04
TCOF1-215ENST00000515516 TRANK1O15050 2925 aa15.29■□□□□ 0.04
TCOF1-215ENST00000515516 SPTBN5Q9NRC6 3674 aaKnown RBP15.29■□□□□ 0.04
TCOF1-215ENST00000515516 TTC3P53804 2025 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 A0A0U1RQF3 1178 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 FAM205CA6NFA0 338 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 GAS2O43903 313 aaKnown RBP15.28■□□□□ 0.04
TCOF1-215ENST00000515516 NEMFO60524 1076 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 CSDE1O75534 798 aaKnown RBP15.28■□□□□ 0.04
TCOF1-215ENST00000515516 FGF18O76093 207 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 SSTR3P32745 418 aaPredicted RBP15.28■□□□□ 0.04
TCOF1-215ENST00000515516 NPEPPSP55786 919 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 CTTNQ14247 550 aaKnown RBP15.28■□□□□ 0.04
TCOF1-215ENST00000515516 COL19A1Q14993 1142 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 XKR9Q5GH70 373 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 TWF2Q6IBS0 349 aaKnown RBP15.28■□□□□ 0.04
TCOF1-215ENST00000515516 CATSPER4Q7RTX7 472 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 LRRC43Q8N309 656 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 TCP11Q8WWU5 503 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 PSPC1Q8WXF1 523 aaKnown RBP15.28■□□□□ 0.04
TCOF1-215ENST00000515516 TNFRSF25Q93038 417 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 ZSCAN31Q96LW9 406 aaPredicted RBP15.28■□□□□ 0.04
TCOF1-215ENST00000515516 CCDC43Q96MW1 224 aaKnown RBP15.28■□□□□ 0.04
TCOF1-215ENST00000515516 CASD1Q96PB1 797 aa15.28■□□□□ 0.04
TCOF1-215ENST00000515516 C1QTNF1Q9BXJ1 281 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms