RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 VPS52Q8N1B4 723 aa12.46□□□□□ -0.41
DDX41-216ENST00000513562 CMTR1Q8N1G2 835 aaKnown RBP12.46□□□□□ -0.41
DDX41-216ENST00000513562 TMEM169Q96HH4 297 aa12.46□□□□□ -0.41
DDX41-216ENST00000513562 MRPL9Q9BYD2 267 aaKnown RBP12.46□□□□□ -0.41
DDX41-216ENST00000513562 SFXN1Q9H9B4 322 aa12.46□□□□□ -0.41
DDX41-216ENST00000513562 ZNF302Q9NR11 478 aa12.46□□□□□ -0.41
DDX41-216ENST00000513562 DLL3Q9NYJ7 618 aa12.46□□□□□ -0.41
DDX41-216ENST00000513562 R4GN57 208 aa12.46□□□□□ -0.41
DDX41-216ENST00000513562 A0A0U1RQF3 1178 aa12.45□□□□□ -0.42
DDX41-216ENST00000513562 NT5C1B-RDH14C9J2C7 533 aa12.45□□□□□ -0.42
DDX41-216ENST00000513562 MEIS1O00470 390 aa12.45□□□□□ -0.42
DDX41-216ENST00000513562 ZSCAN20P17040 1043 aaPredicted RBP12.45□□□□□ -0.42
DDX41-216ENST00000513562 ALDH7A1P49419 539 aaKnown RBP12.45□□□□□ -0.42
DDX41-216ENST00000513562 POLGP54098 1239 aaPredicted RBP12.45□□□□□ -0.42
DDX41-216ENST00000513562 NUCB1Q02818 461 aa12.45□□□□□ -0.42
DDX41-216ENST00000513562 TMEM173Q86WV6 379 aaPredicted RBP12.45□□□□□ -0.42
DDX41-216ENST00000513562 TEX2Q8IWB9 1127 aa12.45□□□□□ -0.42
DDX41-216ENST00000513562 METTL13Q8N6R0 699 aa12.45□□□□□ -0.42
DDX41-216ENST00000513562 TMEM87AQ8NBN3 555 aa12.45□□□□□ -0.42
DDX41-216ENST00000513562 RNF169Q8NCN4 708 aa12.45□□□□□ -0.42
DDX41-216ENST00000513562 HELQQ8TDG4 1101 aa12.45□□□□□ -0.42
DDX41-216ENST00000513562 AUTS2Q8WXX7 1259 aa12.45□□□□□ -0.42
DDX41-216ENST00000513562 BBXQ8WY36 941 aaPredicted RBP12.45□□□□□ -0.42
DDX41-216ENST00000513562 ADAMTS10Q9H324 1103 aa12.45□□□□□ -0.42
DDX41-216ENST00000513562 KAT6AQ92794 2004 aa12.45□□□□□ -0.42
DDX41-216ENST00000513562 NCOR2Q9Y618 2525 aa12.45□□□□□ -0.42
DDX41-216ENST00000513562 hCG_1642624A0A1W2PR95 340 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 CARNS1A5YM72 827 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 DDX39AO00148 427 aaKnown RBP12.44□□□□□ -0.42
DDX41-216ENST00000513562 KRT37O76014 449 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 EIF4BP23588 611 aaKnown RBP12.44□□□□□ -0.42
DDX41-216ENST00000513562 CLCN3P51790 818 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 NLRP11P59045 1033 aaKnown RBP12.44□□□□□ -0.42
DDX41-216ENST00000513562 PTH1RQ03431 593 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 MIS18BP1Q6P0N0 1132 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 NIPA1Q7RTP0 329 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 HEATR3Q7Z4Q2 680 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 DDX53Q86TM3 631 aaKnown RBP12.44□□□□□ -0.42
DDX41-216ENST00000513562 PPFIBP1Q86W92 1011 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 LINC01465Q8N7H1 131 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 RSPH1Q8WYR4 309 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 PGBD1Q96JS3 809 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 MTA3Q9BTC8 594 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 IGSF9Q9P2J2 1179 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 WNT16Q9UBV4 365 aa12.44□□□□□ -0.42
DDX41-216ENST00000513562 BAZ2BQ9UIF8 2168 aaKnown RBP12.43□□□□□ -0.42
DDX41-216ENST00000513562 KRBA1A5PL33 1030 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 DHX15O43143 795 aaKnown RBP12.43□□□□□ -0.42
DDX41-216ENST00000513562 NARSO43776 548 aaKnown RBP12.43□□□□□ -0.42
DDX41-216ENST00000513562 ZC3H11AO75152 810 aaKnown RBP eCLIP12.43□□□□□ -0.42
DDX41-216ENST00000513562 FOSP01100 380 aaPredicted RBP12.43□□□□□ -0.42
DDX41-216ENST00000513562 SREBF1P36956 1147 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 PTPN14Q15678 1187 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 LETM2Q2VYF4 491 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 DIEXFQ68CQ4 756 aaKnown RBP12.43□□□□□ -0.42
DDX41-216ENST00000513562 SWSAP1Q6NVH7 229 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 ZC3H14Q6PJT7 736 aaKnown RBP12.43□□□□□ -0.42
DDX41-216ENST00000513562 C15orf39Q6ZRI6 1047 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 ZNF710Q8N1W2 664 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 BCL7CQ8WUZ0 217 aaPredicted RBP12.43□□□□□ -0.42
DDX41-216ENST00000513562 RUBCNQ92622 972 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 IGSF21Q96ID5 467 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 CNTNAP3BQ96NU0 1288 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 MAP7D2Q96T17 732 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 ANO3Q9BYT9 981 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 CNTNAP3Q9BZ76 1288 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 CEP131Q9UPN4 1083 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 AKT3Q9Y243 479 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 MAFBQ9Y5Q3 323 aaPredicted RBP12.43□□□□□ -0.42
DDX41-216ENST00000513562 LOXHD1Q8IVV2 1947 aa12.43□□□□□ -0.42
DDX41-216ENST00000513562 SH2B2O14492 632 aaPredicted RBP12.42□□□□□ -0.42
DDX41-216ENST00000513562 MAGEB2O15479 319 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 N4BP1O75113 896 aaKnown RBP12.42□□□□□ -0.42
DDX41-216ENST00000513562 CFHP08603 1231 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 CALM1P0DP23 149 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 CALM2P0DP24 149 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 CALM3P0DP25 149 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 DARSP14868 501 aaKnown RBP12.42□□□□□ -0.42
DDX41-216ENST00000513562 RXRAP19793 462 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 CLCN4P51793 760 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 TBC1D8BQ0IIM8 1120 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 WWC2Q6AWC2 1192 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 TYW1BQ6NUM6 668 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 CASC1Q6TDU7 716 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 TMTC3Q6ZXV5 915 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 CKAP2LQ8IYA6 745 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 RIN2Q8WYP3 895 aaPredicted RBP12.42□□□□□ -0.42
DDX41-216ENST00000513562 HINFPQ9BQA5 517 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 VN1R3Q9BXE9 311 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 TBC1D17Q9HA65 648 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 RIC8AQ9NPQ8 531 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 DACT1Q9NYF0 836 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 EPG5Q9HCE0 2579 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 KMT2BQ9UMN6 2715 aaPredicted RBP12.42□□□□□ -0.42
DDX41-216ENST00000513562 DENND4AQ7Z401 1863 aa12.42□□□□□ -0.42
DDX41-216ENST00000513562 EP300Q09472 2414 aaPredicted RBP12.41□□□□□ -0.42
DDX41-216ENST00000513562 CCDC69A6NI79 296 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 FAM86B1E9PN63 330 aa12.41□□□□□ -0.42
DDX41-216ENST00000513562 IPO5O00410 1097 aaKnown RBP12.41□□□□□ -0.42
DDX41-216ENST00000513562 GALTP07902 379 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms