RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ARHGEF16Q5VV41 709 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 WDR59Q6PJI9 974 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 MCF2L2Q86YR7 1114 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 CTAGE3PQ8IX95 158 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 DEPTORQ8TB45 409 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 EVI5O60447 810 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 STAMBPO95630 424 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 MYBP10242 640 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 KIAA1755Q5JYT7 1200 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 RCSD1Q6JBY9 416 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 RPAINQ86UA6 219 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 MSL3Q8N5Y2 521 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 GBP7Q8N8V2 638 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 CAVIN3Q969G5 261 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 VCXQ9H320 206 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 JMJD4Q9H9V9 463 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 SLC16A3O15427 465 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 PIK3CAP42336 1068 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 SESN3P58005 492 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 AMPD2Q01433 879 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 ITIH3Q06033 890 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 LRRC14Q15048 493 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 IL17AQ16552 155 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 LGSNQ5TDP6 509 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 ARHGAP27Q6ZUM4 889 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 METTL13Q8N6R0 699 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 SEC16BQ96JE7 1060 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 HAUS2Q9NVX0 235 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 CNOT8Q9UFF9 292 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 KCNG1Q9UIX4 513 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 PNMA2Q9UL42 364 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 PCDHB4Q9Y5E5 795 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 EXOC1LA0A1B0GW35 172 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 PPIP5K2O43314 1243 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 EYA4O95677 639 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 GH2P01242 217 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 PRELPP51888 382 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 SLC17A8Q8NDX2 589 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 CFAP57Q96MR6 1250 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 TLR10Q9BXR5 811 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 STK33Q9BYT3 514 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 KMT5AQ9NQR1 393 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 IL17RBQ9NRM6 502 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 F5H6K3 240 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 KLRC3Q07444 240 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 ALCAMQ13740 583 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 XXYLT1Q8NBI6 393 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 MYCBPAPQ8TBZ2 947 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 ZNF564Q8TBZ8 553 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 TXLNGQ9NUQ3 528 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 ANAPC7Q9UJX3 599 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 NAGPAQ9UK23 515 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 REXO2Q9Y3B8 237 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 DAGLAQ9Y4D2 1042 aa9.05□□□□□ -0.96
LIMCH1-216ENST00000512820 RCCD1A6NED2 376 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 SORBS3O60504 671 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 LUC7L3O95232 432 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 CHN1P15882 459 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 FGFR4P22455 802 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 PEX19P40855 299 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 PPP4CP60510 307 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 PADI6Q6TGC4 694 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 LARGE2Q8N3Y3 721 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 BANK1Q8NDB2 785 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 TPCN2Q8NHX9 752 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 XPO6Q96QU8 1125 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 MPHOSPH6Q99547 160 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 AGPAT1Q99943 283 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 NUP85Q9BW27 656 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 PITPNM3Q9BZ71 974 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 NOP53Q9NZM5 478 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 SEL1LQ9UBV2 794 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 PIK3C2AO00443 1686 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 AKAP12Q02952 1782 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 ZSCAN5CA6NGD5 496 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 VAMP7P51809 220 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 PEX3P56589 373 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 CCHCR1Q8TD31 782 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 NCAPGQ9BPX3 1015 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 HEMGNQ9BXL5 484 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 SUCLA2Q9P2R7 463 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 CLRN2A0PK11 232 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 CCDC160A6NGH7 325 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 SGK1O00141 431 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 KRT19P08727 400 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 CFAP157Q5JU67 520 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 FAM47EQ6ZV65 393 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 THOC1Q96FV9 657 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 EHD4Q9H223 541 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 FAM208AQ9UK61 1670 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 H0YCG3 227 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 KLRC4O43908 158 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 MYBL2P10244 700 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 CRKP46108 304 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 FMO5P49326 533 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 NFIXQ14938 502 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 HADHQ16836 314 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 MEI1Q5TIA1 1274 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 CC2D2BQ6DHV5 1058 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 GJB7Q6PEY0 223 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms