RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 RFX1P22670 979 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 WTAPQ15007 396 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 RSPO4Q2I0M5 234 aaPredicted RBP13.2□□□□□ -0.3
RNF4-216ENST00000511859 KIZQ2M2Z5 673 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 LETM2Q2VYF4 491 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 C15orf39Q6ZRI6 1047 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 ECHDC2Q86YB7 292 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 GPR161Q8N6U8 529 aaKnown RBP13.2□□□□□ -0.3
RNF4-216ENST00000511859 RSPH1Q8WYR4 309 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 NXPE3Q969Y0 559 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 MXRA8Q9BRK3 442 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 LZTS2Q9BRK4 669 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 MRPL9Q9BYD2 267 aaKnown RBP13.2□□□□□ -0.3
RNF4-216ENST00000511859 SFXN1Q9H9B4 322 aa13.2□□□□□ -0.3
RNF4-216ENST00000511859 CHD8Q9HCK8 2581 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 C2orf16Q68DN1 1984 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 GPR32O75388 356 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 SP9P0CG40 484 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 KIF5BP33176 963 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 BCAR1P56945 870 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 FAM160B1Q5W0V3 765 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 PHLDB3Q6NSJ2 640 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 DDX53Q86TM3 631 aaKnown RBP13.19□□□□□ -0.3
RNF4-216ENST00000511859 C1orf210Q8IVY1 113 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 DCLK2Q8N568 766 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 RIN2Q8WYP3 895 aaPredicted RBP13.19□□□□□ -0.3
RNF4-216ENST00000511859 ZBP1Q9H171 429 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 PCDHA6Q9UN73 950 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 SIT1Q9Y3P8 196 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 PCDHA8Q9Y5H6 950 aa13.19□□□□□ -0.3
RNF4-216ENST00000511859 A0A0U1RQF3 1178 aa13.18□□□□□ -0.3
RNF4-216ENST00000511859 KRBA1A5PL33 1030 aa13.18□□□□□ -0.3
RNF4-216ENST00000511859 SPDYE4A6NLX3 237 aa13.18□□□□□ -0.3
RNF4-216ENST00000511859 NT5C1B-RDH14C9J2C7 533 aa13.18□□□□□ -0.3
RNF4-216ENST00000511859 CENPBP07199 599 aaPredicted RBP13.18□□□□□ -0.3
RNF4-216ENST00000511859 CFHP08603 1231 aa13.18□□□□□ -0.3
RNF4-216ENST00000511859 METAP2P50579 478 aaKnown RBP eCLIP13.18□□□□□ -0.3
RNF4-216ENST00000511859 CLLU1OSQ5K130 101 aa13.18□□□□□ -0.3
RNF4-216ENST00000511859 KIAA0319Q5VV43 1072 aa13.18□□□□□ -0.3
RNF4-216ENST00000511859 CTCFLQ8NI51 663 aaPredicted RBP13.18□□□□□ -0.3
RNF4-216ENST00000511859 SENP2Q9HC62 589 aa13.18□□□□□ -0.3
RNF4-216ENST00000511859 STK39Q9UEW8 545 aa13.18□□□□□ -0.3
RNF4-216ENST00000511859 DOCK8Q8NF50 2099 aa13.17□□□□□ -0.3
RNF4-216ENST00000511859 BACH1O14867 736 aa13.17□□□□□ -0.3
RNF4-216ENST00000511859 NARSO43776 548 aaKnown RBP13.17□□□□□ -0.3
RNF4-216ENST00000511859 GNAQP50148 359 aa13.17□□□□□ -0.3
RNF4-216ENST00000511859 ABHD15Q6UXT9 468 aa13.17□□□□□ -0.3
RNF4-216ENST00000511859 CYP26C1Q6V0L0 522 aa13.17□□□□□ -0.3
RNF4-216ENST00000511859 METTL13Q8N6R0 699 aa13.17□□□□□ -0.3
RNF4-216ENST00000511859 SUMF1Q8NBK3 374 aa13.17□□□□□ -0.3
RNF4-216ENST00000511859 TBC1D17Q9HA65 648 aa13.17□□□□□ -0.3
RNF4-216ENST00000511859 U3KPZ7 1027 aaPredicted RBP13.17□□□□□ -0.3
RNF4-216ENST00000511859 PRR5-ARHGAP8B1AHC4 643 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 ZBTB42B2RXF5 422 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 MAGEB2O15479 319 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 KINO60870 393 aaKnown RBP13.16□□□□□ -0.3
RNF4-216ENST00000511859 VTNP04004 478 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 SRFP11831 508 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 EIF4BP23588 611 aaKnown RBP13.16□□□□□ -0.3
RNF4-216ENST00000511859 ATXN1P54253 815 aaKnown RBP13.16□□□□□ -0.3
RNF4-216ENST00000511859 ARHGAP8P85298 464 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 UBE2SQ16763 222 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 CEP55Q53EZ4 464 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 PDXDC2PQ6P474 469 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 ZNF598Q86UK7 904 aaKnown RBP13.16□□□□□ -0.3
RNF4-216ENST00000511859 SLC44A3Q8N4M1 653 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 RNF169Q8NCN4 708 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 HELQQ8TDG4 1101 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 AUTS2Q8WXX7 1259 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 BBXQ8WY36 941 aaPredicted RBP13.16□□□□□ -0.3
RNF4-216ENST00000511859 STAMQ92783 540 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 IGSF21Q96ID5 467 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 PPP1R16BQ96T49 567 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 EMILIN2Q9BXX0 1053 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 OSBPL3Q9H4L5 887 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 AGO4Q9HCK5 861 aaKnown RBP13.16□□□□□ -0.3
RNF4-216ENST00000511859 ZNF302Q9NR11 478 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 DACT1Q9NYF0 836 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 DLGAP2Q9P1A6 1054 aa13.16□□□□□ -0.3
RNF4-216ENST00000511859 C22orf31O95567 290 aa13.15□□□□□ -0.3
RNF4-216ENST00000511859 DCNP07585 359 aaKnown RBP13.15□□□□□ -0.3
RNF4-216ENST00000511859 KLRC2P26717 231 aa13.15□□□□□ -0.3
RNF4-216ENST00000511859 TMOD1P28289 359 aa13.15□□□□□ -0.3
RNF4-216ENST00000511859 CLCN4P51793 760 aa13.15□□□□□ -0.3
RNF4-216ENST00000511859 NLRP11P59045 1033 aaKnown RBP13.15□□□□□ -0.3
RNF4-216ENST00000511859 ITGB3BPQ13352 177 aaPredicted RBP13.15□□□□□ -0.3
RNF4-216ENST00000511859 HDAC1Q13547 482 aaPredicted RBP13.15□□□□□ -0.3
RNF4-216ENST00000511859 ZNF528Q3MIS6 628 aa13.15□□□□□ -0.3
RNF4-216ENST00000511859 SPECC1Q5M775 1068 aa13.15□□□□□ -0.3
RNF4-216ENST00000511859 VARS2Q5ST30 1063 aaKnown RBP13.15□□□□□ -0.3
RNF4-216ENST00000511859 RALYLQ86SE5 291 aaKnown RBP13.15□□□□□ -0.3
RNF4-216ENST00000511859 CCDC60Q8IWA6 550 aaPredicted RBP13.15□□□□□ -0.3
RNF4-216ENST00000511859 TEX2Q8IWB9 1127 aa13.15□□□□□ -0.3
RNF4-216ENST00000511859 CMASQ8NFW8 434 aaPredicted RBP13.15□□□□□ -0.3
RNF4-216ENST00000511859 NCOA7Q8NI08 942 aa13.15□□□□□ -0.3
RNF4-216ENST00000511859 IGDCC4Q8TDY8 1250 aa13.15□□□□□ -0.3
RNF4-216ENST00000511859 RHOBTB2Q9BYZ6 727 aa13.15□□□□□ -0.3
RNF4-216ENST00000511859 ADAMTS10Q9H324 1103 aa13.15□□□□□ -0.3
RNF4-216ENST00000511859 EPS15L1Q9UBC2 864 aa13.15□□□□□ -0.3
RNF4-216ENST00000511859 CA14Q9ULX7 337 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms