RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 UHRF1Q96T88 793 aaPredicted RBP20.14■□□□□ 0.81
TPM3-220ENST00000509601 C11orf84Q9BUA3 381 aaPredicted RBP20.14■□□□□ 0.81
TPM3-220ENST00000509601 PLVAPQ9BX97 442 aa20.14■□□□□ 0.81
TPM3-220ENST00000509601 UBE2ZQ9H832 354 aaPredicted RBP20.14■□□□□ 0.81
TPM3-220ENST00000509601 PLAGL2Q9UPG8 496 aa20.14■□□□□ 0.81
TPM3-220ENST00000509601 IBSPP21815 317 aaPredicted RBP20.13■□□□□ 0.81
TPM3-220ENST00000509601 NPEPPSP55786 919 aa20.13■□□□□ 0.81
TPM3-220ENST00000509601 TCEAL5Q5H9L2 206 aa20.13■□□□□ 0.81
TPM3-220ENST00000509601 SPPL3Q8TCT6 385 aa20.13■□□□□ 0.81
TPM3-220ENST00000509601 P2RX5Q93086 422 aa20.13■□□□□ 0.81
TPM3-220ENST00000509601 LMAN2LQ9H0V9 348 aa20.13■□□□□ 0.81
TPM3-220ENST00000509601 ELAC1Q9H777 363 aaKnown RBP20.13■□□□□ 0.81
TPM3-220ENST00000509601 BRMS1Q9HCU9 246 aa20.13■□□□□ 0.81
TPM3-220ENST00000509601 ALG13Q9NP73 1137 aaKnown RBP20.13■□□□□ 0.81
TPM3-220ENST00000509601 RGL1Q9NZL6 768 aa20.13■□□□□ 0.81
TPM3-220ENST00000509601 BDP1A6H8Y1 2624 aa20.13■□□□□ 0.81
TPM3-220ENST00000509601 MARCH6O60337 910 aa20.12■□□□□ 0.81
TPM3-220ENST00000509601 CSDE1O75534 798 aaKnown RBP20.12■□□□□ 0.81
TPM3-220ENST00000509601 FGFR4P22455 802 aa20.12■□□□□ 0.81
TPM3-220ENST00000509601 DNAJB1P25685 340 aa20.12■□□□□ 0.81
TPM3-220ENST00000509601 FOSBP53539 338 aa20.12■□□□□ 0.81
TPM3-220ENST00000509601 CDC42EP1Q00587 391 aa20.12■□□□□ 0.81
TPM3-220ENST00000509601 TIGD5Q53EQ6 642 aa20.12■□□□□ 0.81
TPM3-220ENST00000509601 PLA2G4FQ68DD2 849 aa20.12■□□□□ 0.81
TPM3-220ENST00000509601 C4orf19Q8IY42 314 aa20.12■□□□□ 0.81
TPM3-220ENST00000509601 IL27Q8NEV9 243 aa20.12■□□□□ 0.81
TPM3-220ENST00000509601 NSUN3Q9H649 340 aaKnown RBP20.12■□□□□ 0.81
TPM3-220ENST00000509601 CYP26B1Q9NR63 512 aa20.12■□□□□ 0.81
TPM3-220ENST00000509601 TMEM161AQ9NX61 479 aa20.12■□□□□ 0.81
TPM3-220ENST00000509601 SUCLA2Q9P2R7 463 aaPredicted RBP20.12■□□□□ 0.81
TPM3-220ENST00000509601 ZBTB39O15060 712 aa20.11■□□□□ 0.81
TPM3-220ENST00000509601 SLITRK3O94933 977 aa20.11■□□□□ 0.81
TPM3-220ENST00000509601 BAG4O95429 457 aaKnown RBP20.11■□□□□ 0.81
TPM3-220ENST00000509601 ITGB1P05556 798 aa20.11■□□□□ 0.81
TPM3-220ENST00000509601 COL19A1Q14993 1142 aa20.11■□□□□ 0.81
TPM3-220ENST00000509601 NAALADL2Q58DX5 795 aa20.11■□□□□ 0.81
TPM3-220ENST00000509601 CCDC83Q8IWF9 413 aa20.11■□□□□ 0.81
TPM3-220ENST00000509601 SLFN12Q8IYM2 578 aa20.11■□□□□ 0.81
TPM3-220ENST00000509601 KLHL23Q8NBE8 558 aa20.11■□□□□ 0.81
TPM3-220ENST00000509601 DYDC2Q96IM9 177 aa20.11■□□□□ 0.81
TPM3-220ENST00000509601 ATP6V0A4Q9HBG4 840 aa20.11■□□□□ 0.81
TPM3-220ENST00000509601 RNF19AQ9NV58 838 aa20.11■□□□□ 0.81
TPM3-220ENST00000509601 FNDC1Q4ZHG4 1894 aaPredicted RBP20.1■□□□□ 0.81
TPM3-220ENST00000509601 A0A087WZ62 844 aa20.1■□□□□ 0.81
TPM3-220ENST00000509601 TBKBP1A7MCY6 615 aa20.1■□□□□ 0.81
TPM3-220ENST00000509601 DKC1O60832 514 aaKnown RBP eCLIP20.1■□□□□ 0.81
TPM3-220ENST00000509601 FGFR1P11362 822 aa20.1■□□□□ 0.81
TPM3-220ENST00000509601 ZSCAN20P17040 1043 aaPredicted RBP20.1■□□□□ 0.81
TPM3-220ENST00000509601 DNM2P50570 870 aa20.1■□□□□ 0.81
TPM3-220ENST00000509601 LEXMQ3ZCV2 418 aa20.1■□□□□ 0.81
TPM3-220ENST00000509601 NCAPH2Q6IBW4 605 aa20.1■□□□□ 0.81
TPM3-220ENST00000509601 KSR1Q8IVT5 923 aa20.1■□□□□ 0.81
TPM3-220ENST00000509601 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.1■□□□□ 0.81
TPM3-220ENST00000509601 NEK9Q8TD19 979 aa20.1■□□□□ 0.81
TPM3-220ENST00000509601 NLRP7Q8WX94 980 aa20.1■□□□□ 0.81
TPM3-220ENST00000509601 MTMR9Q96QG7 549 aa20.1■□□□□ 0.81
TPM3-220ENST00000509601 HSD17B14Q9BPX1 270 aa20.1■□□□□ 0.81
TPM3-220ENST00000509601 FDXACB1Q9BRP7 624 aaPredicted RBP20.1■□□□□ 0.81
TPM3-220ENST00000509601 LLPHQ9BRT6 129 aaKnown RBP20.1■□□□□ 0.81
TPM3-220ENST00000509601 GCOM2Q9BZD3 368 aaPredicted RBP20.1■□□□□ 0.81
TPM3-220ENST00000509601 TYW1Q9NV66 732 aaKnown RBP20.1■□□□□ 0.81
TPM3-220ENST00000509601 RNF216Q9NWF9 866 aaPredicted RBP20.1■□□□□ 0.81
TPM3-220ENST00000509601 KCNA5P22460 613 aa20.09■□□□□ 0.81
TPM3-220ENST00000509601 GUCY1B3Q02153 619 aa20.09■□□□□ 0.81
TPM3-220ENST00000509601 TRIM29Q14134 588 aa20.09■□□□□ 0.81
TPM3-220ENST00000509601 CTTNQ14247 550 aaKnown RBP20.09■□□□□ 0.81
TPM3-220ENST00000509601 ECHDC2Q86YB7 292 aa20.09■□□□□ 0.81
TPM3-220ENST00000509601 RHPN2Q8IUC4 686 aa20.09■□□□□ 0.81
TPM3-220ENST00000509601 PABPC5Q96DU9 382 aaKnown RBP20.09■□□□□ 0.81
TPM3-220ENST00000509601 CEP170P1Q96L14 293 aa20.09■□□□□ 0.81
TPM3-220ENST00000509601 ZSCAN31Q96LW9 406 aaPredicted RBP20.09■□□□□ 0.81
TPM3-220ENST00000509601 CASD1Q96PB1 797 aa20.09■□□□□ 0.81
TPM3-220ENST00000509601 LXNQ9BS40 222 aa20.09■□□□□ 0.81
TPM3-220ENST00000509601 DHX33Q9H6R0 707 aaKnown RBP20.09■□□□□ 0.81
TPM3-220ENST00000509601 CWH43Q9H720 699 aa20.09■□□□□ 0.81
TPM3-220ENST00000509601 HCSTQ9UBK5 93 aa20.09■□□□□ 0.81
TPM3-220ENST00000509601 PCDHA12Q9UN75 941 aa20.09■□□□□ 0.81
TPM3-220ENST00000509601 A0A0U1RQF3 1178 aa20.08■□□□□ 0.81
TPM3-220ENST00000509601 YWHABP31946 246 aaKnown RBP20.08■□□□□ 0.81
TPM3-220ENST00000509601 LTBRP36941 435 aa20.08■□□□□ 0.81
TPM3-220ENST00000509601 CALCRLQ16602 461 aa20.08■□□□□ 0.81
TPM3-220ENST00000509601 LRRC55Q6ZSA7 311 aa20.08■□□□□ 0.81
TPM3-220ENST00000509601 ZNF598Q86UK7 904 aaKnown RBP20.08■□□□□ 0.81
TPM3-220ENST00000509601 SCLT1Q96NL6 688 aa20.08■□□□□ 0.81
TPM3-220ENST00000509601 JPH2Q9BR39 696 aaPredicted RBP20.08■□□□□ 0.81
TPM3-220ENST00000509601 TMEM60Q9H2L4 133 aa20.08■□□□□ 0.81
TPM3-220ENST00000509601 ZSWIM4Q9H7M6 989 aa20.08■□□□□ 0.81
TPM3-220ENST00000509601 IFT122Q9HBG6 1241 aa20.08■□□□□ 0.81
TPM3-220ENST00000509601 KIAA1671Q9BY89 1806 aa20.07■□□□□ 0.8
TPM3-220ENST00000509601 IRS1P35568 1242 aa20.07■□□□□ 0.8
TPM3-220ENST00000509601 TXKP42681 527 aa20.07■□□□□ 0.8
TPM3-220ENST00000509601 RBM25P49756 843 aaKnown RBP20.07■□□□□ 0.8
TPM3-220ENST00000509601 CYP4A11Q02928 519 aa20.07■□□□□ 0.8
TPM3-220ENST00000509601 HYAL1Q12794 435 aa20.07■□□□□ 0.8
TPM3-220ENST00000509601 CTC1Q2NKJ3 1217 aa20.07■□□□□ 0.8
TPM3-220ENST00000509601 ZNF410Q86VK4 478 aa20.07■□□□□ 0.8
TPM3-220ENST00000509601 TPH2Q8IWU9 490 aa20.07■□□□□ 0.8
TPM3-220ENST00000509601 POF1BQ8WVV4 589 aa20.07■□□□□ 0.8
TPM3-220ENST00000509601 EIF2AK1Q9BQI3 630 aaKnown RBP20.07■□□□□ 0.8
TPM3-220ENST00000509601 TMEM117Q9H0C3 514 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms