RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 HESX1Q9UBX0 185 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 K7ERI5 159 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 PAXIP1Q6ZW49 1069 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 MAP7D3Q8IWC1 876 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 NSUN6Q8TEA1 469 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 SLC4A9Q96Q91 983 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 RGL1Q9NZL6 768 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 SGK1O00141 431 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 UCHL3P15374 230 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 IL9RQ01113 521 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 ARHGAP24Q8N264 748 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 PIM2Q9P1W9 311 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 RASGRF2O14827 1237 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 SUN1O94901 812 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 GGPS1O95749 300 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 ZNF131P52739 623 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 KRT39Q6A163 491 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 TXNRD3Q86VQ6 643 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 PPFIBP2Q8ND30 876 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 LRRC1Q9BTT6 524 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 STK33Q9BYT3 514 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 IL17RBQ9NRM6 502 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 PRR12Q9ULL5 1215 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 COMMD10Q9Y6G5 202 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 H2AFXP16104 143 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 OSBPP22059 807 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 NMT1P30419 496 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 IFT88Q13099 833 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 STYK1Q6J9G0 422 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 ENOSF1Q7L5Y1 443 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 RNF34Q969K3 372 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 CFAP57Q96MR6 1250 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 RIOX1Q9H6W3 641 aa11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 CNOT8Q9UFF9 292 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-205ENST00000503057 DENND3A2RUS2 1198 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 FAM187AA6NFU0 413 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 EARS2Q5JPH6 523 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 SCYL2Q6P3W7 929 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 POLR3CQ9BUI4 534 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 WNT8AQ9H1J5 351 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 PODXL2Q9NZ53 605 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 POLLQ9UGP5 575 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 MED1Q15648 1581 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 KIF13AQ9H1H9 1805 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 MYBL1P10243 752 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 CHRNA3P32297 505 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 RFX6Q8HWS3 928 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 TCP11Q8WWU5 503 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 EHD4Q9H223 541 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 POLD4Q9HCU8 107 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 ZCCHC17Q9NP64 241 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 PACSIN2Q9UNF0 486 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 LRRC37A3O60309 1634 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 EMSYQ7Z589 1322 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 CTNND1O60716 968 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 MYBP10242 640 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 NAB2Q15742 525 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 STXBP2Q15833 593 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 ARHGEF18Q6ZSZ5 1173 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 GLYCTKQ8IVS8 523 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 HACE1Q8IYU2 909 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 ZNF564Q8TBZ8 553 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 HOXC10Q9NYD6 342 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 APEX2Q9UBZ4 518 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 PLAGL2Q9UPG8 496 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 INO80B-WBP1J3KQ70 363 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 M0QZ92 97 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 ATP2A3Q93084 1043 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 MCUR1Q96AQ8 359 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 AGPAT1Q99943 283 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 INO80BQ9C086 356 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 RNF146Q9NTX7 359 aa11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-205ENST00000503057 FTLP02792 175 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 TRIM49P0CI25 452 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 TRIM49CP0CI26 452 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 SNRNP48Q6IEG0 339 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 CASC4Q6P4E1 433 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 CCNI2Q6ZMN8 369 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 GABPB2Q8TAK5 448 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 MKNK1Q9BUB5 465 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 NUP85Q9BW27 656 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 ANAPC7Q9UJX3 599 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 SETD1AO15047 1707 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 GYS1P13807 737 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 YWHABP31946 246 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 FMO5P49326 533 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 TFAMQ00059 246 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 COL9A3Q14050 684 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 TRAPPC11Q7Z392 1133 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 SH3RF1Q7Z6J0 888 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 CTAGE3PQ8IX95 158 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 MMGT1Q8N4V1 131 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 SYT2Q8N9I0 419 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 FAM167AQ96KS9 214 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 PSMD1Q99460 953 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 ZNF408Q9H9D4 720 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 IFT122Q9HBG6 1241 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 FBXO40Q9UH90 709 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms