RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CRYGNQ8WXF5 182 aa9.15□□□□□ -0.94
USP54-215ENST00000497106 EML1O00423 815 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 SORBS3O60504 671 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 ERLIN2O94905 339 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 TNNT1P13805 278 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 RARRES1P49788 294 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.15□□□□□ -0.95
USP54-215ENST00000497106 GPR142Q7Z601 462 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 MRPL4Q9BYD3 311 aaKnown RBP9.15□□□□□ -0.95
USP54-215ENST00000497106 COL20A1Q9P218 1284 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 AKT3Q9Y243 479 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 RIPK3Q9Y572 518 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 DENND3A2RUS2 1198 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 TRIM49BA6NDI0 452 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 OPLAHO14841 1288 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 P4HA2O15460 535 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 KLRC4O43908 158 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 ZNF500O60304 480 aaPredicted RBP9.15□□□□□ -0.95
USP54-215ENST00000497106 KIF4AO95239 1232 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 SPATA31C1P0DKV0 1188 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 P4HA1P13674 534 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 NAMPTP43490 491 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 MRPS9P82933 396 aaKnown RBP9.15□□□□□ -0.95
USP54-215ENST00000497106 MAPK6Q16659 721 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 CELF3Q5SZQ8 465 aaKnown RBP9.15□□□□□ -0.95
USP54-215ENST00000497106 TTI2Q6NXR4 508 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 PLPPR4Q7Z2D5 763 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 IL31RAQ8NI17 732 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 ZNF507Q8TCN5 953 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 ATP8B4Q8TF62 1192 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 LMBR1Q8WVP7 490 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 PRIMPOLQ96LW4 560 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.15□□□□□ -0.95
USP54-215ENST00000497106 SEPT11Q9NVA2 429 aaKnown RBP9.15□□□□□ -0.95
USP54-215ENST00000497106 NOD1Q9Y239 953 aa9.15□□□□□ -0.95
USP54-215ENST00000497106 CNTN2Q02246 1040 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 KIF5AQ12840 1032 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 MAP2K5Q13163 448 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 BIRC3Q13489 604 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 EFCC1Q9HA90 598 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 NMRK2Q9NPI5 230 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 ZNF233A6NK53 670 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 XPOTO43592 962 aaKnown RBP9.14□□□□□ -0.95
USP54-215ENST00000497106 TNNC2P02585 160 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 PGK2P07205 417 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 ZNF18P17022 549 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 UBA1P22314 1058 aaKnown RBP9.14□□□□□ -0.95
USP54-215ENST00000497106 TUBB4BP68371 445 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 FSTL1Q12841 308 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 TRPC3Q13507 836 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 RAPGEF1Q13905 1077 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 BMT2Q1RMZ1 405 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 C1orf186Q6ZWK4 172 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 MSANTD4Q8NCY6 345 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 APBA2Q99767 749 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 RBPJLQ9UBG7 517 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 NRBP1Q9UHY1 535 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 TRAF3IP3Q9Y228 551 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 SYNGAP1Q96PV0 1343 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 SLC16A4O15374 487 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 FERP16591 822 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 STAT1P42224 750 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 NR1I3Q14994 352 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 NCAPHQ15003 741 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 CCDC170Q8IYT3 715 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 BRI3BPQ8WY22 251 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 TAF4BQ92750 862 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 CPA4Q9UI42 421 aa9.14□□□□□ -0.95
USP54-215ENST00000497106 CDK5RAP2Q96SN8 1893 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 NPHP3-ACAD11A0A0J9YXS1 232 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 MFAP3LO75121 409 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 KCNA2P16389 499 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 CEP72Q9P209 647 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.13□□□□□ -0.95
USP54-215ENST00000497106 TACC1O75410 805 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 ANXA13P27216 316 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 CNGA1P29973 690 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 ITGB3BPQ13352 177 aaPredicted RBP9.13□□□□□ -0.95
USP54-215ENST00000497106 FBXO16Q8IX29 292 aaPredicted RBP9.13□□□□□ -0.95
USP54-215ENST00000497106 DNAJC19Q96DA6 116 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 TINF2Q9BSI4 451 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 PAPPA2Q9BXP8 1791 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 COL1A2P08123 1366 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 A0A1W2PQJ5 194 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 MYL3P08590 195 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 CD44P16070 742 aaKnown RBP9.13□□□□□ -0.95
USP54-215ENST00000497106 NFIL3Q16649 462 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 GPD1LQ8N335 351 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 CACTINQ8WUQ7 758 aaKnown RBP9.13□□□□□ -0.95
USP54-215ENST00000497106 TRIM6Q9C030 488 aaPredicted RBP9.13□□□□□ -0.95
USP54-215ENST00000497106 CLIC2O15247 247 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 MARK3P27448 753 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 YARSP54577 528 aaKnown RBP9.13□□□□□ -0.95
USP54-215ENST00000497106 BPIFB4P59827 614 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 IGBP1P78318 339 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 SPIRE1Q08AE8 756 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 PPFIA1Q13136 1202 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 ZNF720Q7Z2F6 126 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 RASAL3Q86YV0 1011 aa9.13□□□□□ -0.95
USP54-215ENST00000497106 CAGE1Q8TC20 777 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms