RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 ITCHQ96J02 903 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 CDRT15Q96T59 188 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 PHACTR1Q9C0D0 580 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 TRIT1Q9H3H1 467 aaKnown RBP6.22□□□□□ -1.41
USF3-204ENST00000496826 WARS2Q9UGM6 360 aaKnown RBP6.22□□□□□ -1.41
USF3-204ENST00000496826 ASIC3Q9UHC3 531 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 NRBP1Q9UHY1 535 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 TMEM5Q9Y2B1 443 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 A6NJR5 290 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 ASB14A6NK59 587 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 VWA5AO00534 786 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 STRNO43815 780 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 SERPINB4P48594 390 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 ARMCX4Q5H9R4 360 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 ZNF227Q86WZ6 799 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 RCOR2Q8IZ40 523 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 INPP5DQ92835 1189 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 DISC1Q9NRI5 854 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 SH3BP4Q9P0V3 963 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 CLCA2Q9UQC9 943 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 MYBBP1AQ9BQG0 1328 aaKnown RBP6.22□□□□□ -1.41
USF3-204ENST00000496826 DCAF1Q9Y4B6 1507 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 MT-ND3P03897 115 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 MYL2P10916 166 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 CHRNB4P30926 498 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 BDH1Q02338 343 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 EXOC3L4Q17RC7 722 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 GTF2IRD2BQ6EKJ0 949 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 GTF2IRD2Q86UP8 949 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 SCN4BQ8IWT1 228 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 CLYBLQ8N0X4 340 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 TFB1MQ8WVM0 346 aaKnown RBP6.22□□□□□ -1.41
USF3-204ENST00000496826 ADIPOR1Q96A54 375 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 SUCLG2Q96I99 432 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 CIDEBQ9UHD4 219 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 HPCAL4Q9UM19 191 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 COQ6Q9Y2Z9 468 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 PARNO95453 639 aaKnown RBP6.22□□□□□ -1.41
USF3-204ENST00000496826 BARGINQ6ZT62 677 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 STAMBPL1Q96FJ0 436 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 HES6Q96HZ4 224 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 WDR35Q9P2L0 1181 aa6.22□□□□□ -1.41
USF3-204ENST00000496826 CFAP99D6REC4 459 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 BACH1O14867 736 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 CYP17A1P05093 508 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 ERCC2P18074 760 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 AASDHQ4L235 1098 aaPredicted RBP6.21□□□□□ -1.41
USF3-204ENST00000496826 UNC45BQ8IWX7 931 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 DAW1Q8N136 415 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 SLC4A9Q96Q91 983 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 MRPL11Q9Y3B7 192 aaKnown RBP6.21□□□□□ -1.41
USF3-204ENST00000496826 KIF27Q86VH2 1401 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 A8MXQ7 604 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 BAG2O95816 211 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 NR1D1P20393 614 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 ANXA13P27216 316 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 CDC27P30260 824 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 DNA2P51530 1060 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 TGM3Q08188 693 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 GTF2H3Q13889 308 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 IMPG1Q17R60 797 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 PREPLQ4J6C6 727 aaPredicted RBP6.21□□□□□ -1.41
USF3-204ENST00000496826 Q8N402 240 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 NCLNQ969V3 563 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 IFT43Q96FT9 208 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 PANX2Q96RD6 677 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 KLHL11Q9NVR0 708 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 TMOD3Q9NYL9 352 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 EHD2Q9NZN4 543 aa6.21□□□□□ -1.41
USF3-204ENST00000496826 ANP32DO95626 131 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 GTF2E2P29084 291 aaKnown RBP6.21□□□□□ -1.42
USF3-204ENST00000496826 HSPA13P48723 471 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 GRSF1Q12849 480 aaKnown RBP eCLIP6.21□□□□□ -1.42
USF3-204ENST00000496826 MTFR1Q15390 333 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 AOC3Q16853 763 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 TTC41PQ6P2S7 1318 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 DPH6Q7L8W6 267 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 COLGALT2Q8IYK4 626 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 ARHGEF26Q96DR7 871 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 PPP1R14DQ9NXH3 145 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 SPATA2Q9UM82 520 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 CCDC169A6NNP5 214 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 DDX3XO00571 662 aaKnown RBP eCLIP6.21□□□□□ -1.42
USF3-204ENST00000496826 ULK1O75385 1050 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 STAM2O75886 525 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 MOCS3O95396 460 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 BCL10O95999 233 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 ARL4AP40617 200 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 CABP4P57796 275 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 XRCC4Q13426 336 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 ULK3Q6PHR2 472 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 CDK20Q8IZL9 346 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 NEDD1Q8NHV4 660 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 SLC20A1Q8WUM9 679 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 SH3KBP1Q96B97 665 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 THAP11Q96EK4 314 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 ELMO2Q96JJ3 720 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 AGBL1Q96MI9 1066 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 EYA3Q99504 573 aa6.21□□□□□ -1.42
USF3-204ENST00000496826 NPAS2Q99743 824 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms