RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 ITGB1P05556 798 aa14.3□□□□□ -0.12
PTPRF-214ENST00000496043 TRIM29Q14134 588 aa14.3□□□□□ -0.12
PTPRF-214ENST00000496043 EPHA7Q15375 998 aa14.3□□□□□ -0.12
PTPRF-214ENST00000496043 SLFN12Q8IYM2 578 aa14.3□□□□□ -0.12
PTPRF-214ENST00000496043 KLHL23Q8NBE8 558 aa14.3□□□□□ -0.12
PTPRF-214ENST00000496043 NSUN7Q8NE18 718 aaKnown RBP14.3□□□□□ -0.12
PTPRF-214ENST00000496043 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-214ENST00000496043 NEK9Q8TD19 979 aa14.3□□□□□ -0.12
PTPRF-214ENST00000496043 HAS1Q92839 578 aa14.3□□□□□ -0.12
PTPRF-214ENST00000496043 CEP89Q96ST8 783 aa14.3□□□□□ -0.12
PTPRF-214ENST00000496043 SH2D3AQ9BRG2 576 aa14.3□□□□□ -0.12
PTPRF-214ENST00000496043 INO80BQ9C086 356 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-214ENST00000496043 SUCLA2Q9P2R7 463 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-214ENST00000496043 VAV3Q9UKW4 847 aa14.3□□□□□ -0.12
PTPRF-214ENST00000496043 TRANK1O15050 2925 aa14.3□□□□□ -0.12
PTPRF-214ENST00000496043 TMEM150BA6NC51 233 aa14.29□□□□□ -0.12
PTPRF-214ENST00000496043 HOXA2O43364 376 aa14.29□□□□□ -0.12
PTPRF-214ENST00000496043 NR5A1Q13285 461 aa14.29□□□□□ -0.12
PTPRF-214ENST00000496043 EARS2Q5JPH6 523 aaKnown RBP14.29□□□□□ -0.12
PTPRF-214ENST00000496043 PTCRAQ6ISU1 281 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-214ENST00000496043 ANO5Q75V66 913 aa14.29□□□□□ -0.12
PTPRF-214ENST00000496043 OTUD6AQ7L8S5 288 aa14.29□□□□□ -0.12
PTPRF-214ENST00000496043 POF1BQ8WVV4 589 aa14.29□□□□□ -0.12
PTPRF-214ENST00000496043 PPP2R3CQ969Q6 453 aa14.29□□□□□ -0.12
PTPRF-214ENST00000496043 IGFLR1Q9H665 355 aa14.29□□□□□ -0.12
PTPRF-214ENST00000496043 CYP26B1Q9NR63 512 aa14.29□□□□□ -0.12
PTPRF-214ENST00000496043 CHST12Q9NRB3 414 aa14.29□□□□□ -0.12
PTPRF-214ENST00000496043 TYW1Q9NV66 732 aaKnown RBP14.29□□□□□ -0.12
PTPRF-214ENST00000496043 CLDND1Q9NY35 253 aa14.29□□□□□ -0.12
PTPRF-214ENST00000496043 PPME1Q9Y570 386 aa14.29□□□□□ -0.12
PTPRF-214ENST00000496043 COL4A4P53420 1690 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-214ENST00000496043 TCF20Q9UGU0 1960 aaKnown RBP14.29□□□□□ -0.12
PTPRF-214ENST00000496043 GRXCR2A6NFK2 248 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 BTBD18B2RXH4 712 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 EOMESO95936 686 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 FGFR1P11362 822 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 HYAL1Q12794 435 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 DRP2Q13474 957 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 CAMK1Q14012 370 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 COL19A1Q14993 1142 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 CSPP1Q1MSJ5 1256 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 ECHDC2Q86YB7 292 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 RHPN2Q8IUC4 686 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 C4orf19Q8IY42 314 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 TNFRSF25Q93038 417 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 CEP170P1Q96L14 293 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 TMEM117Q9H0C3 514 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 DACT1Q9NYF0 836 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 PCDHA12Q9UN75 941 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 LIMCH1Q9UPQ0 1083 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 FAM50BQ9Y247 325 aa14.28□□□□□ -0.12
PTPRF-214ENST00000496043 VCANP13611 3396 aa14.27□□□□□ -0.12
PTPRF-214ENST00000496043 A0A087WZ62 844 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 A0A0U1RQF3 1178 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 H3BQ06 376 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-214ENST00000496043 JAK2O60674 1132 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 CSDE1O75534 798 aaKnown RBP14.27□□□□□ -0.13
PTPRF-214ENST00000496043 FGFR4P22455 802 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 DNAJB1P25685 340 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 NPEPPSP55786 919 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 UBE3AQ05086 875 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 CTC1Q2NKJ3 1217 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 PLA2G4FQ68DD2 849 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 NCAPH2Q6IBW4 605 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 ZNF410Q86VK4 478 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 POTEDQ86YR6 584 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 DIS3L2Q8IYB7 885 aaKnown RBP14.27□□□□□ -0.13
PTPRF-214ENST00000496043 ABI1Q8IZP0 508 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 MICAL1Q8TDZ2 1067 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 SLC7A3Q8WY07 619 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 DYDC2Q96IM9 177 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 CASD1Q96PB1 797 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 FDXACB1Q9BRP7 624 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-214ENST00000496043 ZSWIM4Q9H7M6 989 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 RGL1Q9NZL6 768 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 LOXHD1Q8IVV2 1947 aa14.27□□□□□ -0.13
PTPRF-214ENST00000496043 FAM205CA6NFA0 338 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 FGF18O76093 207 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 CSPG5O95196 566 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 LAG3P18627 525 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 SFPQP23246 707 aaKnown RBP eCLIP14.26□□□□□ -0.13
PTPRF-214ENST00000496043 RFC5P40937 340 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 ADAM15Q13444 863 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 SAFBQ15424 915 aaKnown RBP eCLIP14.26□□□□□ -0.13
PTPRF-214ENST00000496043 CALCRLQ16602 461 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 TPH2Q8IWU9 490 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 FAM178BQ8IXR5 827 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 THNSL1Q8IYQ7 743 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 COLGALT1Q8NBJ5 622 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 RNF169Q8NCN4 708 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 ZSCAN31Q96LW9 406 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-214ENST00000496043 C1QTNF1Q9BXJ1 281 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 CWH43Q9H720 699 aa14.26□□□□□ -0.13
PTPRF-214ENST00000496043 PUF60Q9UHX1 559 aaKnown RBP14.26□□□□□ -0.13
PTPRF-214ENST00000496043 RALGAPA2Q2PPJ7 1873 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 ASAP2O43150 1006 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 SLITRK3O94933 977 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 SKIP12755 728 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 IL9P15248 144 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 YWHABP31946 246 aaKnown RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms