RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 GOPCQ9HD26 462 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 SIX2Q9NPC8 291 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 GRHL1Q9NZI5 618 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 BIN2Q9UBW5 565 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 SYNGAP1Q96PV0 1343 aa10.48□□□□□ -0.73
SYNE1-230ENST00000495090 TNRC6CQ9HCJ0 1690 aaKnown RBP10.48□□□□□ -0.73
SYNE1-230ENST00000495090 RASGRF2O14827 1237 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 RIPK2O43353 540 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 TDP2O95551 362 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 ACTN1P12814 892 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 XRCC5P13010 732 aaKnown RBP10.47□□□□□ -0.73
SYNE1-230ENST00000495090 SLC9A1P19634 815 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 NR2F2P24468 414 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 PTGIRP43119 386 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 NOVP48745 357 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 GALCP54803 685 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 PLTPP55058 493 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 AUHQ13825 339 aaKnown RBP10.47□□□□□ -0.73
SYNE1-230ENST00000495090 ECM1Q16610 540 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 CCDC38Q502W7 563 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 ANKRD20A2Q5SQ80 823 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 ANKRD20A1Q5TYW2 823 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 ANKRD20A3Q5VUR7 823 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 FBXO25Q8TCJ0 367 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 RAB3IPQ96QF0 476 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-230ENST00000495090 NAP1L4Q99733 375 aaKnown RBP10.47□□□□□ -0.73
SYNE1-230ENST00000495090 ABCA3Q99758 1704 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 TRIM7Q9C029 511 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 PRKAG3Q9UGI9 489 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 MINPP1Q9UNW1 487 aa10.47□□□□□ -0.73
SYNE1-230ENST00000495090 POTEFA5A3E0 1075 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 MIF4GDA9UHW6 222 aaKnown RBP10.46□□□□□ -0.73
SYNE1-230ENST00000495090 FESP07332 822 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 KRT16P08779 473 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 POTEIP0CG38 1075 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 POTEJP0CG39 1038 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 ALAS1P13196 640 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 RASA1P20936 1047 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 PDE6BP35913 854 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 STAT1P42224 750 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 ADCY7P51828 1080 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 PPARDQ03181 441 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 ACVR2BQ13705 512 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 TCEAL1Q15170 157 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 DIXDC1Q155Q3 683 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 ZNF568Q3ZCX4 644 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 HERC4Q5GLZ8 1057 aaPredicted RBP10.46□□□□□ -0.73
SYNE1-230ENST00000495090 RNF43Q68DV7 783 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 POTEEQ6S8J3 1075 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 TRMT10CQ7L0Y3 403 aaKnown RBP10.46□□□□□ -0.73
SYNE1-230ENST00000495090 NELFCDQ8IXH7 590 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 CFAP61Q8NHU2 1237 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 OLIG1Q8TAK6 271 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 FGFBP2Q9BYJ0 223 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 TRIM31Q9BZY9 425 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 MTFR1LQ9H019 292 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 TAOK3Q9H2K8 898 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 KIF9Q9HAQ2 790 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 CTNNAL1Q9UBT7 734 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 STX8Q9UNK0 236 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 NR2E1Q9Y466 385 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 NAV1Q8NEY1 1877 aa10.46□□□□□ -0.73
SYNE1-230ENST00000495090 SNED1Q8TER0 1413 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 TLDC2A0PJX2 215 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 PDXKO00764 312 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 CALUO43852 315 aaPredicted RBP10.46□□□□□ -0.74
SYNE1-230ENST00000495090 AHCYL1O43865 530 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 SKAP2O75563 359 aaPredicted RBP10.46□□□□□ -0.74
SYNE1-230ENST00000495090 ATP5HO75947 161 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 PLA2G4BP0C869 781 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 GOLGA8HP0CJ92 632 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 CYP11B2P19099 503 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 VCAM1P19320 739 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 CTNNA2P26232 953 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 PRDX5P30044 214 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 PARP6Q2NL67 630 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 AP1ARQ63HQ0 302 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 CYFIP1Q7L576 1253 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 SPATA21Q7Z572 469 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 ERICH1Q86X53 443 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 SLC35G2Q8TBE7 412 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 MICAL1Q8TDZ2 1067 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 U2AF1L4Q8WU68 220 aaKnown RBP10.46□□□□□ -0.74
SYNE1-230ENST00000495090 CTNNBL1Q8WYA6 563 aaPredicted RBP10.46□□□□□ -0.74
SYNE1-230ENST00000495090 GRAMD1AQ96CP6 724 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 DYNLL2Q96FJ2 89 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 SERPINB12Q96P63 405 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 SYT11Q9BT88 431 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 SEMA4AQ9H3S1 761 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 TMEM260Q9NX78 707 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 ADAM22Q9P0K1 906 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 ZFATQ9P243 1243 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 PPP1R9AQ9ULJ8 1098 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 PCDHA3Q9Y5H8 950 aa10.46□□□□□ -0.74
SYNE1-230ENST00000495090 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.46□□□□□ -0.74
SYNE1-230ENST00000495090 HIBADHP31937 336 aaKnown RBP10.45□□□□□ -0.74
SYNE1-230ENST00000495090 RWDD2BP57060 319 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 INHBEP58166 350 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 PPP4CP60510 307 aa10.45□□□□□ -0.74
SYNE1-230ENST00000495090 RBBP5Q15291 538 aaKnown RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms