RNA–Protein interactions for RNA: ENST00000494654.1

MDC1-208, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-208ENST00000494654 RETREG2Q8NC44 543 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 DDX55Q8NHQ9 600 aaKnown RBP eCLIP2.96□□□□□ -1.94
MDC1-208ENST00000494654 DDX54Q8TDD1 881 aaKnown RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 ZNF526Q8TF50 670 aaPredicted RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 CASKIN2Q8WXE0 1202 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 DNAJC9Q8WXX5 260 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 PRCCQ92733 491 aaPredicted RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 INPP5DQ92835 1189 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 GFM2Q969S9 779 aaKnown RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 LRRC59Q96AG4 307 aaKnown RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 LENG1Q96BZ8 264 aaPredicted RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 KLHL29Q96CT2 875 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 LTV1Q96GA3 475 aaPredicted RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 ZNF333Q96JL9 665 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 CATSPER2Q96P56 530 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 MED15Q96RN5 788 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 SEC62Q99442 399 aaKnown RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 NUP88Q99567 741 aaPredicted RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 SYT15Q9BQS2 421 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 BUD13Q9BRD0 619 aaKnown RBP eCLIP2.96□□□□□ -1.94
MDC1-208ENST00000494654 CENPKQ9BS16 269 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 POLR3CQ9BUI4 534 aaPredicted RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 PHACTR1Q9C0D0 580 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 MIS12Q9H081 205 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 BRD8Q9H0E9 1235 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 ISCUQ9H1K1 167 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 LRMDAQ9H2I8 198 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 NRDE2Q9H7Z3 1164 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 ETNK1Q9HBU6 452 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 PCDH18Q9HCL0 1135 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 PREBQ9HCU5 417 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 FAM114A2Q9NRY5 505 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 RBM12Q9NTZ6 932 aaKnown RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 TXLNGQ9NUQ3 528 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 ABCF3Q9NUQ8 709 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 CCDC87Q9NVE4 849 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 PANK4Q9NVE7 773 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 PGPEP1Q9NXJ5 209 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 MIS18AQ9NYP9 233 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 PTTG2Q9NZH5 202 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 NDUFA13Q9P0J0 144 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 LARSQ9P2J5 1176 aaKnown RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 TRIM10Q9UDY6 481 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 CNOT8Q9UFF9 292 aaKnown RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 DDX25Q9UHL0 483 aaKnown RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 SERTAD1Q9UHV2 236 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 CDV3Q9UKY7 258 aaKnown RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 KCNH3Q9ULD8 1083 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 CAPN11Q9UMQ6 739 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 NFU1Q9UMS0 254 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 AGAP1Q9UPQ3 857 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 CTNND2Q9UQB3 1225 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 MAPK8IP1Q9UQF2 711 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 TBC1D30Q9Y2I9 924 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 AMOTL2Q9Y2J4 779 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 SH3GLB1Q9Y371 365 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 LUC7L2Q9Y383 392 aaKnown RBP2.96□□□□□ -1.94
MDC1-208ENST00000494654 PCDHGA11Q9Y5H2 935 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 NFS1Q9Y697 457 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 BTAF1O14981 1849 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 TSC2P49815 1807 aa2.96□□□□□ -1.94
MDC1-208ENST00000494654 UTYO14607 1347 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 IGSF1Q8N6C5 1336 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 COL14A1Q05707 1796 aaKnown RBP2.95□□□□□ -1.94
MDC1-208ENST00000494654 ZNF638Q14966 1978 aaKnown RBP2.95□□□□□ -1.94
MDC1-208ENST00000494654 A0A0J9YVX5 310 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 CARNS1A5YM72 827 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 SIGLEC16A6NMB1 481 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 TTLL8A6PVC2 850 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 GOLGA8BA8MQT2 603 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 LGALS16A8MUM7 142 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 KCNJ18B7U540 433 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 F8VZ95 297 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 ATP5J2-PTCD1G3V325 749 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 CCDC188H7C350 402 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 IPO5O00410 1097 aaKnown RBP2.95□□□□□ -1.94
MDC1-208ENST00000494654 ZNF185O15231 689 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 FOXN1O15353 648 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 NVLO15381 856 aaKnown RBP2.95□□□□□ -1.94
MDC1-208ENST00000494654 SART1O43290 800 aaKnown RBP2.95□□□□□ -1.94
MDC1-208ENST00000494654 SNX3O60493 162 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 CTNND1O60716 968 aaKnown RBP2.95□□□□□ -1.94
MDC1-208ENST00000494654 HNRNPCL1O60812 293 aaKnown RBP2.95□□□□□ -1.94
MDC1-208ENST00000494654 ATP5HO75947 161 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 SUN1O94901 812 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 DKK1O94907 266 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 ASLP04424 464 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 CHGBP05060 677 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 PDHA1P08559 390 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 PDGFRBP09619 1106 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 NUDT17P0C025 328 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 FAM153BP0C7A2 387 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 TROVE2P10155 538 aaKnown RBP eCLIP2.95□□□□□ -1.94
MDC1-208ENST00000494654 PIM1P11309 404 aaPredicted RBP2.95□□□□□ -1.94
MDC1-208ENST00000494654 VDRP11473 427 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 CHN1P15882 459 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 ALOX15P16050 662 aaPredicted RBP2.95□□□□□ -1.94
MDC1-208ENST00000494654 NAT1P18440 290 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 PAX3P23760 479 aa2.95□□□□□ -1.94
MDC1-208ENST00000494654 EEF1GP26641 437 aaKnown RBP2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms