RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 ZNF558Q96NG5 402 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 PRRX2Q99811 253 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 INO80BQ9C086 356 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-213ENST00000493475 TMX1Q9H3N1 280 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 C11orf16Q9NQ32 467 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 ENTPD7Q9NQZ7 604 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 DISC1Q9NRI5 854 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 NID2Q14112 1375 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 C9IYK1 514 aa13.05□□□□□ -0.32
COL6A3-213ENST00000493475 EPB41L2O43491 1005 aaKnown RBP13.05□□□□□ -0.32
COL6A3-213ENST00000493475 ST18O60284 1047 aa13.05□□□□□ -0.32
COL6A3-213ENST00000493475 IFNAR1P17181 557 aa13.05□□□□□ -0.32
COL6A3-213ENST00000493475 XBP1P17861 261 aa13.05□□□□□ -0.32
COL6A3-213ENST00000493475 SFPQP23246 707 aaKnown RBP eCLIP13.05□□□□□ -0.32
COL6A3-213ENST00000493475 RPS6KB1P23443 525 aa13.05□□□□□ -0.32
COL6A3-213ENST00000493475 HSPA4P34932 840 aa13.05□□□□□ -0.32
COL6A3-213ENST00000493475 NLRP11P59045 1033 aaKnown RBP13.05□□□□□ -0.32
COL6A3-213ENST00000493475 GALNT17Q6IS24 598 aa13.05□□□□□ -0.32
COL6A3-213ENST00000493475 FAM228AQ86W67 206 aa13.05□□□□□ -0.32
COL6A3-213ENST00000493475 RNF135Q8IUD6 432 aa13.05□□□□□ -0.32
COL6A3-213ENST00000493475 SUGP1Q8IWZ8 645 aaKnown RBP13.05□□□□□ -0.32
COL6A3-213ENST00000493475 COLGALT1Q8NBJ5 622 aa13.05□□□□□ -0.32
COL6A3-213ENST00000493475 CRYGNQ8WXF5 182 aa13.05□□□□□ -0.32
COL6A3-213ENST00000493475 PPP1R16BQ96T49 567 aa13.05□□□□□ -0.32
COL6A3-213ENST00000493475 GCOM2Q9BZD3 368 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-213ENST00000493475 FAM217BQ9NTX9 383 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-213ENST00000493475 TYW1Q9NV66 732 aaKnown RBP13.05□□□□□ -0.32
COL6A3-213ENST00000493475 STK39Q9UEW8 545 aa13.05□□□□□ -0.32
COL6A3-213ENST00000493475 PIEZO1Q92508 2521 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 CHMP2AO43633 222 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 GPR32O75388 356 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 CDKL5O76039 1030 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 EOMESO95936 686 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 ATF7P17544 494 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-213ENST00000493475 PLCB3Q01970 1234 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 PRKCEQ02156 737 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 DLX2Q07687 328 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-213ENST00000493475 SSRP1Q08945 709 aaKnown RBP13.04□□□□□ -0.32
COL6A3-213ENST00000493475 COL9A3Q14050 684 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-213ENST00000493475 TPRNQ4KMQ1 711 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 MIER3Q7Z3K6 550 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 ZBTB33Q86T24 672 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 RNF169Q8NCN4 708 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 TMEM40Q8WWA1 233 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 MRPS27Q92552 414 aaKnown RBP13.04□□□□□ -0.32
COL6A3-213ENST00000493475 PHKBQ93100 1093 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 MSLNLQ96KJ4 702 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 TCF25Q9BQ70 676 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 PHF7Q9BWX1 381 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-213ENST00000493475 CHST12Q9NRB3 414 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 SNX14Q9Y5W7 946 aa13.04□□□□□ -0.32
COL6A3-213ENST00000493475 ZBTB42B2RXF5 422 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 LINC01565O15544 149 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 DEXIO95424 95 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 FGFR1P11362 822 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 HOXB8P17481 243 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-213ENST00000493475 DNAJB1P25685 340 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 GTF2F1P35269 517 aaKnown RBP eCLIP13.03□□□□□ -0.32
COL6A3-213ENST00000493475 ALDH7A1P49419 539 aaKnown RBP13.03□□□□□ -0.32
COL6A3-213ENST00000493475 GATMP50440 423 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 CLCN3P51790 818 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 FAM189BP81408 668 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 CAMK1Q14012 370 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 XKR3Q5GH77 459 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 FAM102BQ5T8I3 360 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 CES5AQ6NT32 575 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 TMC7Q7Z402 723 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 PLCD3Q8N3E9 789 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 EDAQ92838 391 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 CASP10Q92851 521 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 KCNB2Q92953 911 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 NAP1L4Q99733 375 aaKnown RBP13.03□□□□□ -0.32
COL6A3-213ENST00000493475 SPG21Q9NZD8 308 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 VPS54Q9P1Q0 977 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 SEPT9Q9UHD8 586 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-213ENST00000493475 MUTYHQ9UIF7 546 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 BARX2Q9UMQ3 279 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-213ENST00000493475 PCDHA4Q9UN74 947 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 USP15Q9Y4E8 981 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-213ENST00000493475 CYP46A1Q9Y6A2 500 aa13.03□□□□□ -0.32
COL6A3-213ENST00000493475 MUC6Q6W4X9 2439 aa13.02□□□□□ -0.32
COL6A3-213ENST00000493475 MSH4O15457 936 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 MARCH6O60337 910 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 MGEA5O60502 916 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 DARSP14868 501 aaKnown RBP13.02□□□□□ -0.33
COL6A3-213ENST00000493475 ATP4AP20648 1035 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 CA8P35219 290 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 RAB27AP51159 221 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 GIT2Q14161 759 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 SMC1AQ14683 1233 aaKnown RBP13.02□□□□□ -0.33
COL6A3-213ENST00000493475 DUSP6Q16828 381 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 PLPP4Q5VZY2 271 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 KCNT2Q6UVM3 1135 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 MOXD1Q6UVY6 613 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 ADGRD2Q7Z7M1 963 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 LRRC71Q8N4P6 559 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 RASGRP4Q8TDF6 673 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 SLC5A5Q92911 643 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 TMEM169Q96HH4 297 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 NECTIN4Q96NY8 510 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms