RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 RAB21Q9UL25 225 aa23.07■■□□□ 1.28
CCDC88B-208ENST00000492980 SNX12Q9UMY4 172 aa23.07■■□□□ 1.28
CCDC88B-208ENST00000492980 MYH10P35580 1976 aa23.07■■□□□ 1.28
CCDC88B-208ENST00000492980 CCDC151A5D8V7 595 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 LMNB1P20700 586 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 CKAP4Q07065 602 aaKnown RBP23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 BRD3Q15059 726 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 PPP2R5AQ15172 486 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 SUPT20HL1Q3ZLR7 823 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 UTP14CQ5TAP6 766 aaKnown RBP23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 ZNF746Q6NUN9 644 aaPredicted RBP23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 NLRX1Q86UT6 975 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 KRT222Q8N1A0 295 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 RNF10Q8N5U6 811 aaKnown RBP23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 NSUN6Q8TEA1 469 aaKnown RBP23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 CAPZA3Q96KX2 299 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 SENP7Q9BQF6 1050 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 MOV10L1Q9BXT6 1211 aaKnown RBP23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 TMEM206Q9H813 350 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 ANKEF1Q9NU02 776 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 PTK2Q05397 1052 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 DRC1Q96MC2 740 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 ACAD9Q9H845 621 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 CYP39A1Q9NYL5 469 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 ADAMTS1Q9UHI8 967 aa23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 BZW2Q9Y6E2 419 aaKnown RBP23.06■■□□□ 1.28
CCDC88B-208ENST00000492980 LCTP09848 1927 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 SPDYE16A6NNV3 312 aaPredicted RBP23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 ZNF185O15231 689 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 MAFGO15525 162 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 EXOC3O60645 756 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 RHOXF2BP0C7M4 288 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 PRKCIP41743 596 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 PRKG1Q13976 671 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 PLA2G4FQ68DD2 849 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 IQCEQ6IPM2 695 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 GJB7Q6PEY0 223 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 ZNF571Q7Z3V5 609 aaPredicted RBP23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 NOX5Q96PH1 765 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 ACCSQ96QU6 501 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 RHOXF2Q9BQY4 288 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 ST6GALNAC4Q9H4F1 302 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 ARFGAP3Q9NP61 516 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 A1CFQ9NQ94 594 aaKnown RBP23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 MYPNQ86TC9 1320 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 USP2O75604 605 aaPredicted RBP23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 RGS20O76081 388 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 TRIM49P0CI25 452 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 TRIM49CP0CI26 452 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 KCNA2P16389 499 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 CBWD6Q4V339 395 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 CBWD3Q5JTY5 395 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 CBWD5Q5RIA9 395 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 TMEM174Q8WUU8 243 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 GPRC5CQ9NQ84 441 aa23.05■■□□□ 1.28
CCDC88B-208ENST00000492980 SBF1O95248 1867 aa23.04■■□□□ 1.28
CCDC88B-208ENST00000492980 ATP8B1O43520 1251 aa23.04■■□□□ 1.28
CCDC88B-208ENST00000492980 NPEPPSP55786 919 aa23.04■■□□□ 1.28
CCDC88B-208ENST00000492980 GTF2BQ00403 316 aa23.04■■□□□ 1.28
CCDC88B-208ENST00000492980 BFSP1Q12934 665 aa23.04■■□□□ 1.28
CCDC88B-208ENST00000492980 XKR9Q5GH70 373 aa23.04■■□□□ 1.28
CCDC88B-208ENST00000492980 SH3D19Q5HYK7 790 aa23.04■■□□□ 1.28
CCDC88B-208ENST00000492980 C12orf56Q8IXR9 622 aa23.04■■□□□ 1.28
CCDC88B-208ENST00000492980 RPGRIP1Q96KN7 1286 aa23.04■■□□□ 1.28
CCDC88B-208ENST00000492980 PCDHA10Q9Y5I2 948 aa23.04■■□□□ 1.28
CCDC88B-208ENST00000492980 DOCK5Q9H7D0 1870 aa23.04■■□□□ 1.28
CCDC88B-208ENST00000492980 TISP43B9A030 160 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 PDE2AO00408 941 aaPredicted RBP23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 BUB1O43683 1085 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 TBC1D8O95759 1140 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 PRLRP16471 622 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 NAB2Q15742 525 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 ANO5Q75V66 913 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 HAUS6Q7Z4H7 955 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 HOXC10Q9NYD6 342 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 PAPPA2Q9BXP8 1791 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 ARID2Q68CP9 1835 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 PTPRFP10586 1907 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 NCKAP1LP55160 1127 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 GLIPR1L2Q4G1C9 344 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 TRMT1LQ7Z2T5 733 aaKnown RBP23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 PACSIN1Q9BY11 444 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 SNCAIPQ9Y6H5 919 aa23.03■■□□□ 1.28
CCDC88B-208ENST00000492980 HNRNPLLQ8WVV9 542 aaKnown RBP23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 KLRC1P26715 233 aa23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 PEX3P56589 373 aa23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 MYL7Q01449 175 aa23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 FAM102BQ5T8I3 360 aa23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 CREG2Q8IUH2 290 aa23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 SMAP1Q8IYB5 467 aaPredicted RBP23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 RDH13Q8NBN7 331 aa23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 CAGE1Q8TC20 777 aa23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 CBWD1Q9BRT8 395 aa23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 MAF1Q9H063 256 aa23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 PCIF1Q9H4Z3 704 aa23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 GABBR1Q9UBS5 961 aa23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 HYOU1Q9Y4L1 999 aa23.02■■□□□ 1.28
CCDC88B-208ENST00000492980 NFASCO94856 1347 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms