RNA–Protein interactions for RNA: ENST00000492858.6

GPNMB-214, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 721 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-214ENST00000492858 PCDHA8Q9Y5H6 950 aa13.74□□□□□ -0.21
GPNMB-214ENST00000492858 SPTBN2O15020 2390 aa13.74□□□□□ -0.21
GPNMB-214ENST00000492858 COL1A2P08123 1366 aa13.73□□□□□ -0.21
GPNMB-214ENST00000492858 ZBTB42B2RXF5 422 aa13.73□□□□□ -0.21
GPNMB-214ENST00000492858 HIP1O00291 1037 aa13.73□□□□□ -0.21
GPNMB-214ENST00000492858 ATG7O95352 703 aa13.73□□□□□ -0.21
GPNMB-214ENST00000492858 DCNP07585 359 aaKnown RBP13.73□□□□□ -0.21
GPNMB-214ENST00000492858 CTSAP10619 480 aa13.73□□□□□ -0.21
GPNMB-214ENST00000492858 ITGB3BPQ13352 177 aaPredicted RBP13.73□□□□□ -0.21
GPNMB-214ENST00000492858 SART3Q15020 963 aaKnown RBP13.73□□□□□ -0.21
GPNMB-214ENST00000492858 ZNF484Q5JVG2 852 aa13.73□□□□□ -0.21
GPNMB-214ENST00000492858 FAM160B1Q5W0V3 765 aa13.73□□□□□ -0.21
GPNMB-214ENST00000492858 PDXDC2PQ6P474 469 aa13.73□□□□□ -0.21
GPNMB-214ENST00000492858 TMEM173Q86WV6 379 aaPredicted RBP13.73□□□□□ -0.21
GPNMB-214ENST00000492858 METTL13Q8N6R0 699 aa13.73□□□□□ -0.21
GPNMB-214ENST00000492858 MYL10Q9BUA6 226 aa13.73□□□□□ -0.21
GPNMB-214ENST00000492858 IRAK3Q9Y616 596 aa13.73□□□□□ -0.21
GPNMB-214ENST00000492858 GPR179Q6PRD1 2367 aa13.73□□□□□ -0.21
GPNMB-214ENST00000492858 IGKV6D-21A0A0A0MT36 114 aa13.72□□□□□ -0.21
GPNMB-214ENST00000492858 DDX39AO00148 427 aaKnown RBP13.72□□□□□ -0.21
GPNMB-214ENST00000492858 ZC3H11AO75152 810 aaKnown RBP eCLIP13.72□□□□□ -0.21
GPNMB-214ENST00000492858 C22orf31O95567 290 aa13.72□□□□□ -0.21
GPNMB-214ENST00000492858 CCNE2O96020 404 aa13.72□□□□□ -0.21
GPNMB-214ENST00000492858 KIF5BP33176 963 aa13.72□□□□□ -0.21
GPNMB-214ENST00000492858 POLGP54098 1239 aaPredicted RBP13.72□□□□□ -0.21
GPNMB-214ENST00000492858 GIT2Q14161 759 aa13.72□□□□□ -0.21
GPNMB-214ENST00000492858 LETM2Q2VYF4 491 aa13.72□□□□□ -0.21
GPNMB-214ENST00000492858 RALYLQ86SE5 291 aaKnown RBP13.72□□□□□ -0.21
GPNMB-214ENST00000492858 PPFIBP1Q86W92 1011 aa13.72□□□□□ -0.21
GPNMB-214ENST00000492858 C1orf210Q8IVY1 113 aa13.72□□□□□ -0.21
GPNMB-214ENST00000492858 CCDC60Q8IWA6 550 aaPredicted RBP13.72□□□□□ -0.21
GPNMB-214ENST00000492858 CTCFLQ8NI51 663 aaPredicted RBP13.72□□□□□ -0.21
GPNMB-214ENST00000492858 RSAD2Q8WXG1 361 aa13.72□□□□□ -0.21
GPNMB-214ENST00000492858 MRPL9Q9BYD2 267 aaKnown RBP13.72□□□□□ -0.21
GPNMB-214ENST00000492858 AGO4Q9HCK5 861 aaKnown RBP13.72□□□□□ -0.21
GPNMB-214ENST00000492858 DENND4AQ7Z401 1863 aa13.72□□□□□ -0.21
GPNMB-214ENST00000492858 N4BP1O75113 896 aaKnown RBP13.71□□□□□ -0.21
GPNMB-214ENST00000492858 PLEKHA8P1O95397 391 aa13.71□□□□□ -0.21
GPNMB-214ENST00000492858 CLCN3P51790 818 aa13.71□□□□□ -0.21
GPNMB-214ENST00000492858 NLRP11P59045 1033 aaKnown RBP13.71□□□□□ -0.21
GPNMB-214ENST00000492858 NONOQ15233 471 aaKnown RBP eCLIP13.71□□□□□ -0.21
GPNMB-214ENST00000492858 ABHD15Q6UXT9 468 aa13.71□□□□□ -0.21
GPNMB-214ENST00000492858 DDX53Q86TM3 631 aaKnown RBP13.71□□□□□ -0.21
GPNMB-214ENST00000492858 CKAP2LQ8IYA6 745 aa13.71□□□□□ -0.21
GPNMB-214ENST00000492858 SUMF1Q8NBK3 374 aa13.71□□□□□ -0.21
GPNMB-214ENST00000492858 IL25Q9H293 177 aa13.71□□□□□ -0.21
GPNMB-214ENST00000492858 ZNF302Q9NR11 478 aa13.71□□□□□ -0.21
GPNMB-214ENST00000492858 AKT3Q9Y243 479 aa13.71□□□□□ -0.21
GPNMB-214ENST00000492858 SIT1Q9Y3P8 196 aa13.71□□□□□ -0.21
GPNMB-214ENST00000492858 A0A0U1RQF3 1178 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 hCG_1642624A0A1W2PR95 340 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 KINO60870 393 aaKnown RBP13.7□□□□□ -0.22
GPNMB-214ENST00000492858 SRFP11831 508 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 EIF4BP23588 611 aaKnown RBP13.7□□□□□ -0.22
GPNMB-214ENST00000492858 SMARCA1P28370 1054 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 GBP2P32456 591 aaPredicted RBP13.7□□□□□ -0.22
GPNMB-214ENST00000492858 PTPN14Q15678 1187 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 CEP55Q53EZ4 464 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 C15orf39Q6ZRI6 1047 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 TRMT1LQ7Z2T5 733 aaKnown RBP13.7□□□□□ -0.22
GPNMB-214ENST00000492858 ZNF598Q86UK7 904 aaKnown RBP13.7□□□□□ -0.22
GPNMB-214ENST00000492858 POTEDQ86YR6 584 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 ZNF654Q8IZM8 581 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 CMTR1Q8N1G2 835 aaKnown RBP13.7□□□□□ -0.22
GPNMB-214ENST00000492858 SRBD1Q8N5C6 995 aaKnown RBP13.7□□□□□ -0.22
GPNMB-214ENST00000492858 BCL7CQ8WUZ0 217 aaPredicted RBP13.7□□□□□ -0.22
GPNMB-214ENST00000492858 IGSF21Q96ID5 467 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 ZNF668Q96K58 619 aaPredicted RBP13.7□□□□□ -0.22
GPNMB-214ENST00000492858 MAP3K14Q99558 947 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 LZTS2Q9BRK4 669 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 DLGAP2Q9P1A6 1054 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 U3KPZ7 1027 aaPredicted RBP13.7□□□□□ -0.22
GPNMB-214ENST00000492858 CHD6Q8TD26 2715 aa13.7□□□□□ -0.22
GPNMB-214ENST00000492858 DDAH1O94760 285 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 CYP21A2P08686 494 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 ATP4AP20648 1035 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 SDHBP21912 280 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 KLRC2P26717 231 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 GNAQP50148 359 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 CLCN4P51793 760 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 ATXN1P54253 815 aaKnown RBP13.69□□□□□ -0.22
GPNMB-214ENST00000492858 HDAC1Q13547 482 aaPredicted RBP13.69□□□□□ -0.22
GPNMB-214ENST00000492858 ST3GAL2Q16842 350 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 PHLDB3Q6NSJ2 640 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 SWSAP1Q6NVH7 229 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 SLC44A3Q8N4M1 653 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 GPR152Q8TDT2 470 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 IGDCC4Q8TDY8 1250 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 PGBD1Q96JS3 809 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 MAP7D2Q96T17 732 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 EMILIN2Q9BXX0 1053 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 ADAMTS10Q9H324 1103 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 NCDNQ9UBB6 729 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 TAF6LQ9Y6J9 622 aa13.69□□□□□ -0.22
GPNMB-214ENST00000492858 CHD8Q9HCK8 2581 aa13.68□□□□□ -0.22
GPNMB-214ENST00000492858 POTEMA6NI47 508 aa13.68□□□□□ -0.22
GPNMB-214ENST00000492858 FGFR4P22455 802 aa13.68□□□□□ -0.22
GPNMB-214ENST00000492858 ANTXR2P58335 489 aa13.68□□□□□ -0.22
GPNMB-214ENST00000492858 VARS2Q5ST30 1063 aaKnown RBP13.68□□□□□ -0.22
GPNMB-214ENST00000492858 KIAA0319Q5VV43 1072 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms