RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 PRKAR2AP13861 404 aaKnown RBP10.66□□□□□ -0.7
USP54-214ENST00000492357 TMOD1P28289 359 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 CASP1P29466 404 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 HOXC8P31273 242 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 GRK4P32298 578 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 PRCPP42785 496 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 NAMPTP43490 491 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 EFNA5P52803 228 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 GTF2BQ00403 316 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 PTPN11Q06124 597 aaPredicted RBP10.66□□□□□ -0.7
USP54-214ENST00000492357 FSCN1Q16658 493 aaKnown RBP10.66□□□□□ -0.7
USP54-214ENST00000492357 UTP14CQ5TAP6 766 aaKnown RBP10.66□□□□□ -0.7
USP54-214ENST00000492357 ZNF720Q7Z2F6 126 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 SFR1Q86XK3 245 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 MYCT1Q8N699 235 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 DNAJC5GQ8N7S2 189 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 KIAA0895Q8NCT3 520 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 ANKRD20A12PQ8NF67 263 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 ERCC4Q92889 916 aaPredicted RBP10.66□□□□□ -0.7
USP54-214ENST00000492357 P2RX5Q93086 422 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 CTAGE1Q96RT6 745 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 MRPL44Q9H9J2 332 aaKnown RBP10.66□□□□□ -0.7
USP54-214ENST00000492357 HMX1Q9NP08 348 aaPredicted RBP10.66□□□□□ -0.7
USP54-214ENST00000492357 EXOC7Q9UPT5 735 aa10.66□□□□□ -0.7
USP54-214ENST00000492357 MOXD2PA6NHM9 499 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 ZBTB39O15060 712 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 ADAMTS4O75173 837 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 GNA14O95837 355 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 TPM3P06753 285 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 RPL13P26373 211 aaKnown RBP10.65□□□□□ -0.7
USP54-214ENST00000492357 EEF1GP26641 437 aaKnown RBP10.65□□□□□ -0.7
USP54-214ENST00000492357 ARL2P36404 184 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 NPEPPSP55786 919 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 PURAQ00577 322 aaKnown RBP10.65□□□□□ -0.7
USP54-214ENST00000492357 ENPEPQ07075 957 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 TFDP1Q14186 410 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 NCAPHQ15003 741 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 MTERF2Q49AM1 385 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 HS2ST1Q7LGA3 356 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 RNF180Q86T96 592 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 SESTD1Q86VW0 696 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 DHX40Q8IX18 779 aaKnown RBP10.65□□□□□ -0.7
USP54-214ENST00000492357 C12orf56Q8IXR9 622 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 ZC3H3Q8IXZ2 948 aaKnown RBP10.65□□□□□ -0.7
USP54-214ENST00000492357 KLHDC9Q8NEP7 349 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 TRPV1Q8NER1 839 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 CEP63Q96MT8 703 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 FIZ1Q96SL8 496 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 MTG1Q9BT17 334 aaPredicted RBP10.65□□□□□ -0.7
USP54-214ENST00000492357 C2orf40Q9H1Z8 148 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 THAP9Q9H5L6 903 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 XPNPEP1Q9NQW7 623 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 TYW1Q9NV66 732 aaKnown RBP10.65□□□□□ -0.7
USP54-214ENST00000492357 DDX20Q9UHI6 824 aaKnown RBP10.65□□□□□ -0.7
USP54-214ENST00000492357 TRPC6Q9Y210 931 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 PTPN22Q9Y2R2 807 aa10.65□□□□□ -0.7
USP54-214ENST00000492357 SCN10AQ9Y5Y9 1956 aa10.65□□□□□ -0.71
USP54-214ENST00000492357 SIP14410 1827 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.64□□□□□ -0.71
USP54-214ENST00000492357 MBLAC1A4D2B0 266 aaPredicted RBP10.64□□□□□ -0.71
USP54-214ENST00000492357 LRRC10BA6NIK2 292 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 ZBTB42B2RXF5 422 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 MAPK13O15264 365 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 ADCY6O43306 1168 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 CALUO43852 315 aaPredicted RBP10.64□□□□□ -0.71
USP54-214ENST00000492357 INSRRP14616 1297 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 CD44P16070 742 aaKnown RBP10.64□□□□□ -0.71
USP54-214ENST00000492357 ZNF18P17022 549 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 MARSP56192 900 aaKnown RBP10.64□□□□□ -0.71
USP54-214ENST00000492357 HTRA3P83110 453 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 FKBP3Q00688 224 aaKnown RBP10.64□□□□□ -0.71
USP54-214ENST00000492357 PPP2R3AQ06190 1150 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 PPFIA1Q13136 1202 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 TPD52L1Q16890 204 aaPredicted RBP10.64□□□□□ -0.71
USP54-214ENST00000492357 KNOP1Q1ED39 458 aaKnown RBP10.64□□□□□ -0.71
USP54-214ENST00000492357 ZCWPW2Q504Y3 356 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 PRAMEF19Q5SWL8 479 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 CDKAL1Q5VV42 579 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 PLA2G4FQ68DD2 849 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 TTI2Q6NXR4 508 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 HAUS6Q7Z4H7 955 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 ZNF410Q86VK4 478 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 SLC9A9Q8IVB4 645 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 MAP4K3Q8IVH8 894 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 AOPEPQ8N6M6 819 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 LINC01465Q8N7H1 131 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 ARRDC4Q8NCT1 418 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 SCFD1Q8WVM8 642 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 NELFBQ8WX92 580 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 PSPC1Q8WXF1 523 aaKnown RBP10.64□□□□□ -0.71
USP54-214ENST00000492357 ACCSQ96QU6 501 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 MKNK1Q9BUB5 465 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 TMEM134Q9H6X4 195 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 SLC39A2Q9NP94 309 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 XPNPEP3Q9NQH7 507 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 ARHGAP28Q9P2N2 729 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 GDAQ9Y2T3 454 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 NFE2L3Q9Y4A8 694 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 TRIM17Q9Y577 477 aa10.64□□□□□ -0.71
USP54-214ENST00000492357 SMIM35A0A1B0GVV1 85 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms