RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 XPNPEP1Q9NQW7 623 aa18.13■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 COL4A3BPQ9Y5P4 624 aa18.13■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 PTPRSQ13332 1948 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 LOXHD1Q8IVV2 1947 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 ARHGEF35A5YM69 484 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 GPR182O15218 404 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 EIF4BP23588 611 aaKnown RBP18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 DNAJB2P25686 324 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 LONP1P36776 959 aaKnown RBP18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 GRIN1Q05586 938 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 NFX1Q12986 1120 aaKnown RBP18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 RAB30Q15771 203 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 HYIQ5T013 277 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 FAM228AQ86W67 206 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 HERC6Q8IVU3 1022 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 NLRP4Q96MN2 994 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 FTHL17Q9BXU8 183 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 PBX4Q9BYU1 374 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 GCOM2Q9BZD3 368 aaPredicted RBP18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 MSRAQ9UJ68 235 aa18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 MORC2Q9Y6X9 1032 aaPredicted RBP18.12■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 A0A087WZ62 844 aa18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 DARSP14868 501 aaKnown RBP18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 MARCKSP29966 332 aaPredicted RBP18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 PBX2P40425 430 aa18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 NASPP49321 788 aaPredicted RBP18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 RABGGTBP53611 331 aa18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 ZRSR1Q15695 479 aaKnown RBP18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 FAM43BQ6ZT52 329 aaPredicted RBP18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 CABP7Q86V35 215 aa18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 KSR1Q8IVT5 923 aa18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 MYOCDQ8IZQ8 938 aa18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 PRPF31Q8WWY3 499 aaKnown RBP18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 FDXACB1Q9BRP7 624 aaPredicted RBP18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 NT5C3AQ9H0P0 336 aa18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 BHMT2Q9H2M3 363 aa18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 FBXO2Q9UK22 296 aaPredicted RBP18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 ST3GAL5Q9UNP4 418 aa18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 DNM3Q9UQ16 869 aa18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 PCDHA11Q9Y5I1 949 aa18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 SRPRBQ9Y5M8 271 aaKnown RBP18.11■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 GBF1Q92538 1859 aa18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 ASAP2O43150 1006 aa18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 SLC26A4O43511 780 aa18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 EYA4O95677 639 aa18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 LAMTOR4Q0VGL1 99 aa18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 SLC39A14Q15043 492 aa18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 PADI6Q6TGC4 694 aa18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 TMCO2Q7Z6W1 182 aaPredicted RBP18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 MCPH1Q8NEM0 835 aa18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 LINC01599Q8WXQ3 324 aa18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 TIFAQ96CG3 184 aa18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 CDK5RAP3Q96JB5 506 aa18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 PNMA5Q96PV4 448 aa18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 POLR3FQ9H1D9 316 aaPredicted RBP18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 TMX1Q9H3N1 280 aa18.1■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 TMEM265A0A087WTH1 108 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 E9PMD0 336 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 ENPP3O14638 875 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 BRD1O95696 1058 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 UBA7P41226 1012 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 GRB10Q13322 594 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 MXD4Q14582 209 aaPredicted RBP18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 STK38Q15208 465 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 TMEM119Q4V9L6 283 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 ZNF697Q5TEC3 545 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 KCTD17Q8N5Z5 321 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 CALML4Q96GE6 196 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 ZBED2Q9BTP6 218 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 INO80BQ9C086 356 aaPredicted RBP18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 CSRNP2Q9H175 543 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 TSPYL2Q9H2G4 693 aaPredicted RBP18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 NKX2-4Q9H2Z4 354 aa18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 YBX2Q9Y2T7 364 aaKnown RBP18.09■□□□□ 0.49
MSH5-SAPCD1-206ENST00000491552 DENND3A2RUS2 1198 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 TLL1O43897 1013 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 MGEA5O60502 916 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 GJB5O95377 273 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 YEATS4O95619 227 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SRGAP2CP0DJJ0 459 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 CYP11B2P19099 503 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 FGFR4P22455 802 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 SFPQP23246 707 aaKnown RBP eCLIP18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 ARL2P36404 184 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 TFDP1Q14186 410 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 FOXD4L6Q3SYB3 417 aaPredicted RBP18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 FAM117BQ6P1L5 589 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 FOXD4L3Q6VB84 417 aaPredicted RBP18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 MAEAQ7L5Y9 396 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 KCNK18Q7Z418 384 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 RNF149Q8NC42 400 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 LINC00301Q8NCQ3 95 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 ASAP3Q8TDY4 903 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 TOP1MTQ969P6 601 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 PLIN2Q99541 437 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 IFT122Q9HBG6 1241 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 GPRC5CQ9NQ84 441 aa18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 TFIP11Q9UBB9 837 aaKnown RBP18.08■□□□□ 0.48
MSH5-SAPCD1-206ENST00000491552 CSDE1O75534 798 aaKnown RBP18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms