RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 ARHGAP28Q9P2N2 729 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 NDOR1Q9UHB4 597 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 ATP8A1Q9Y2Q0 1164 aa4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 LAS1LQ9Y4W2 734 aaKnown RBP4.17□□□□□ -1.74
DEPDC1-204ENST00000489862 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 ZNF561-AS1K7EIQ3 104 aa4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 KCNQ2O43526 872 aa4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 MC4RP32245 332 aa4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 SEC23AQ15436 765 aa4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 NFE2Q16621 373 aaPredicted RBP4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 LONRF2Q1L5Z9 754 aa4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 C14orf80Q86SX3 495 aa4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 CISD2Q8N5K1 135 aaKnown RBP4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 SLC7A14Q8TBB6 771 aa4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 LRRC37BQ96QE4 947 aa4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 MPHOSPH6Q99547 160 aaKnown RBP4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 FEZ1Q99689 392 aa4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 SLC4A7Q9Y6M7 1214 aa4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 RPS6KL1Q9Y6S9 549 aa4.16□□□□□ -1.74
DEPDC1-204ENST00000489862 PRAMEF25A6NGN4 478 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 INO80B-WBP1J3KQ70 363 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 GSTA4O15217 222 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 TSPAN6O43657 245 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 SH3BP5O60239 455 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 ALDH1L1O75891 902 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 RASGRP1O95267 797 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 C4BPAP04003 597 aaKnown RBP4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 NAT1P18440 290 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 MAKP20794 623 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 PTGS1P23219 599 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 POLD1P28340 1107 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 RRADP55042 308 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 LACTBP83111 547 aaPredicted RBP4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 EXOSC10Q01780 885 aaKnown RBP4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 TOP3AQ13472 1001 aaPredicted RBP4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 USP10Q14694 798 aaKnown RBP4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 NOLC1Q14978 699 aaKnown RBP eCLIP4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 FAM47CQ5HY64 1035 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 FIGNQ5HY92 759 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 C16orf86Q6ZW13 317 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 DDX42Q86XP3 938 aaKnown RBP eCLIP4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 THNSL2Q86YJ6 484 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 HOMER1Q86YM7 354 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 REXO1L1PQ8IX06 675 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 CCDC136Q96JN2 1154 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 INO80BQ9C086 356 aaPredicted RBP4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 SLKQ9H2G2 1235 aaPredicted RBP4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 ADARB2Q9NS39 739 aaKnown RBP4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 GNL3LQ9NVN8 582 aaKnown RBP4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 PTGFRNQ9P2B2 879 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 COQ6Q9Y2Z9 468 aa4.15□□□□□ -1.74
DEPDC1-204ENST00000489862 SHTN1A0MZ66 631 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 FOXS1O43638 330 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 CLASP2O75122 1294 aaKnown RBP4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 ASMTLO95671 621 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 LDHAP00338 332 aaKnown RBP4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 GJA4P35212 333 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 ADCY8P40145 1251 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 IL13RA1P78552 427 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 TTF1Q15361 905 aaPredicted RBP4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 WDR72Q3MJ13 1102 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 TM4SF20Q53R12 229 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 FSTL4Q6MZW2 842 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 TCTN3Q6NUS6 607 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 CLEC4GQ6UXB4 293 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 DPP8Q6V1X1 898 aaPredicted RBP4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 LRP10Q7Z4F1 713 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 IFNL2Q8IZJ0 200 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 TMTC2Q8N394 836 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 SCLYQ96I15 445 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 LMF1Q96S06 567 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 CARD11Q9BXL7 1154 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 UBA5Q9GZZ9 404 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 SEC61A2Q9H9S3 476 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 INCENPQ9NQS7 918 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 UCKL1Q9NWZ5 548 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 GALNT8Q9NY28 637 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 BTBD7Q9P203 1132 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 PTCH2Q9Y6C5 1203 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 SCRIBQ14160 1630 aa4.14□□□□□ -1.75
DEPDC1-204ENST00000489862 SCDO00767 359 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 PRPF3O43395 683 aaKnown RBP4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 SCGB1D2O95969 90 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 AOAHP28039 575 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 MCL1Q07820 350 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 RNF151Q2KHN1 245 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 LRSAM1Q6UWE0 723 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 TAX1BP1Q86VP1 789 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 CCAR1Q8IX12 1150 aaKnown RBP4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 GSTCDQ8NEC7 633 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 NEIL1Q96FI4 390 aaPredicted RBP4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 ARPC5LQ9BPX5 153 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 AMNQ9BXJ7 453 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 A0A087X0B3 334 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 CUTAO60888 179 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 EFCAB14O75071 495 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 MPIG6BO95866 241 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 MMEP08473 750 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 KCNQ1P51787 676 aa4.13□□□□□ -1.75
DEPDC1-204ENST00000489862 DGCR2P98153 550 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms