RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 ZBP1Q9H171 429 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 PSTPIP2Q9H939 334 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 RNF19AQ9NV58 838 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 SEC63Q9UGP8 760 aaKnown RBP10.58□□□□□ -0.72
COL17A1-207ENST00000488320 CDV3Q9UKY7 258 aaKnown RBP10.58□□□□□ -0.72
COL17A1-207ENST00000488320 PCDHB15Q9Y5E8 787 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 NCOR2Q9Y618 2525 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 LAMA4Q16363 1823 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 DCDC2BA2VCK2 349 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 PRR5-ARHGAP8B1AHC4 643 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 VTNP04004 478 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 SLC26A2P50443 739 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 ARHGAP8P85298 464 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 WTAPQ15007 396 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 ZNF484Q5JVG2 852 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 FAM160B1Q5W0V3 765 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 CATIPQ7Z7H3 387 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 ECHDC2Q86YB7 292 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 CKAP2LQ8IYA6 745 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 SLC44A3Q8N4M1 653 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 SUMF1Q8NBK3 374 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 FEZF2Q8TBJ5 459 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 EMILIN2Q9BXX0 1053 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 MRPL9Q9BYD2 267 aaKnown RBP10.57□□□□□ -0.72
COL17A1-207ENST00000488320 DIAPH3Q9NSV4 1193 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 EPG5Q9HCE0 2579 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 FANCMQ8IYD8 2048 aa10.57□□□□□ -0.72
COL17A1-207ENST00000488320 DENND4AQ7Z401 1863 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 ZC3H11AO75152 810 aaKnown RBP eCLIP10.56□□□□□ -0.72
COL17A1-207ENST00000488320 CTSAP10619 480 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 SRFP11831 508 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 POLGP54098 1239 aaPredicted RBP10.56□□□□□ -0.72
COL17A1-207ENST00000488320 PTPN14Q15678 1187 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 CLLU1OSQ5K130 101 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 PHLDB3Q6NSJ2 640 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 TRMT1LQ7Z2T5 733 aaKnown RBP10.56□□□□□ -0.72
COL17A1-207ENST00000488320 GPR152Q8TDT2 470 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 ATRIPQ8WXE1 791 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 STAMQ92783 540 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 BORCS6Q96GS4 357 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 MXRA8Q9BRK3 442 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 DSCC1Q9BVC3 393 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 KCNH7Q9NS40 1196 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 USP18Q9UMW8 372 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 PCDHA6Q9UN73 950 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 AKT3Q9Y243 479 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 PCDHA8Q9Y5H6 950 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 NFASCO94856 1347 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 C2orf16Q68DN1 1984 aa10.56□□□□□ -0.72
COL17A1-207ENST00000488320 FRYLO94915 3013 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 COL1A2P08123 1366 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 CEP250Q9BV73 2442 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 DDX39AO00148 427 aaKnown RBP10.55□□□□□ -0.72
COL17A1-207ENST00000488320 LAMTOR5O43504 91 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 GPR32O75388 356 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 SSBP05455 408 aaKnown RBP eCLIP10.55□□□□□ -0.72
COL17A1-207ENST00000488320 KIF5BP33176 963 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 NLRP11P59045 1033 aaKnown RBP10.55□□□□□ -0.72
COL17A1-207ENST00000488320 TROAPQ12815 778 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 SART3Q15020 963 aaKnown RBP10.55□□□□□ -0.72
COL17A1-207ENST00000488320 UBE2SQ16763 222 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 PDXDC2PQ6P474 469 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 DCLRE1AQ6PJP8 1040 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 C15orf39Q6ZRI6 1047 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 DDX53Q86TM3 631 aaKnown RBP10.55□□□□□ -0.72
COL17A1-207ENST00000488320 CTCFLQ8NI51 663 aaPredicted RBP10.55□□□□□ -0.72
COL17A1-207ENST00000488320 NXPE3Q969Y0 559 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 KLHL5Q96PQ7 755 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 RTKNQ9BST9 563 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 ZNF302Q9NR11 478 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 ARHGEF3Q9NR81 526 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 SPATA6Q9NWH7 488 aaPredicted RBP10.55□□□□□ -0.72
COL17A1-207ENST00000488320 IRAK3Q9Y616 596 aa10.55□□□□□ -0.72
COL17A1-207ENST00000488320 CCDC195A0A1B0GUA6 201 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 CARNS1A5YM72 827 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 POTEMA6NI47 508 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 SPTLC1O15269 473 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 ATG7O95352 703 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 MYBP10242 640 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 TMOD1P28289 359 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 ZNF76P36508 570 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 CLCN4P51793 760 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 LMNB2Q03252 620 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 CSTF1Q05048 431 aaKnown RBP10.54□□□□□ -0.72
COL17A1-207ENST00000488320 RNASELQ05823 741 aaKnown RBP10.54□□□□□ -0.72
COL17A1-207ENST00000488320 SWSAP1Q6NVH7 229 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 ELMSAN1Q6PJG2 1045 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 POTEGQ6S5H5 508 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 IGSF21Q96ID5 467 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 SHDQ96IW2 340 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 ZNF668Q96K58 619 aaPredicted RBP10.54□□□□□ -0.72
COL17A1-207ENST00000488320 SCLT1Q96NL6 688 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 BCO2Q9BYV7 579 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 FOXQ1Q9C009 403 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 GBP3Q9H0R5 595 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 SENP2Q9HC62 589 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 DACT1Q9NYF0 836 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 DLGAP2Q9P1A6 1054 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 CACNA1IQ9P0X4 2223 aa10.54□□□□□ -0.72
COL17A1-207ENST00000488320 ACACBO00763 2458 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms