RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 EYA4O95677 639 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 ZSCAN20P17040 1043 aaPredicted RBP13.75□□□□□ -0.21
VPS16-208ENST00000487461 FGFR4P22455 802 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 NDUFV1P49821 464 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 GPC3P51654 580 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 ERVFC1P60507 584 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 UBE3AQ05086 875 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 DRP2Q13474 957 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 SMAD4Q13485 552 aaKnown RBP13.75□□□□□ -0.21
VPS16-208ENST00000487461 LRRC55Q6ZSA7 311 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 MIER3Q7Z3K6 550 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 ZNF710Q8N1W2 664 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 DAGLBQ8NCG7 672 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 RDM1Q8NG50 284 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 FAM122AQ96E09 287 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 CASD1Q96PB1 797 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 CEP89Q96ST8 783 aa13.75□□□□□ -0.21
VPS16-208ENST00000487461 NIFKQ9BYG3 293 aaKnown RBP13.75□□□□□ -0.21
VPS16-208ENST00000487461 PER2O15055 1255 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 DCXO43602 365 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 CSDE1O75534 798 aaKnown RBP13.74□□□□□ -0.21
VPS16-208ENST00000487461 GLP2RO95838 553 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 DARSP14868 501 aaKnown RBP13.74□□□□□ -0.21
VPS16-208ENST00000487461 TBC1D8BQ0IIM8 1120 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 XKR3Q5GH77 459 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 GALNT17Q6IS24 598 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 ECHDC2Q86YB7 292 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 THNSL1Q8IYQ7 743 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 ETNPPLQ8TBG4 499 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 SH2D3AQ9BRG2 576 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 TMEM117Q9H0C3 514 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 TLE6Q9H808 572 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 KCNJ14Q9UNX9 436 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 ARIH1Q9Y4X5 557 aaPredicted RBP13.74□□□□□ -0.21
VPS16-208ENST00000487461 KIAA1671Q9BY89 1806 aa13.74□□□□□ -0.21
VPS16-208ENST00000487461 IGKV6-21A0A0C4DH24 114 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 DDX11L8A8MPP1 907 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 PRR33A8MZF0 331 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 FSCN2O14926 492 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 DTNBO60941 627 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 LAG3P18627 525 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 RBM10P98175 930 aaKnown RBP13.73□□□□□ -0.21
VPS16-208ENST00000487461 SCRN1Q12765 414 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 COASYQ13057 564 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 INF2Q27J81 1249 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 MTERF2Q49AM1 385 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 CPLX2Q6PUV4 134 aaKnown RBP13.73□□□□□ -0.21
VPS16-208ENST00000487461 MOXD1Q6UVY6 613 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 NLRP7Q8WX94 980 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 TLR9Q9NR96 1032 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 SEPT9Q9UHD8 586 aaPredicted RBP13.73□□□□□ -0.21
VPS16-208ENST00000487461 DDX25Q9UHL0 483 aaKnown RBP13.73□□□□□ -0.21
VPS16-208ENST00000487461 BARX2Q9UMQ3 279 aaPredicted RBP13.73□□□□□ -0.21
VPS16-208ENST00000487461 HCN4Q9Y3Q4 1203 aa13.73□□□□□ -0.21
VPS16-208ENST00000487461 FNDC1Q4ZHG4 1894 aaPredicted RBP13.73□□□□□ -0.21
VPS16-208ENST00000487461 A0A0U1RQF3 1178 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 EML1O00423 815 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 HOXA2O43364 376 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 SLC37A4O43826 429 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 PLCB3Q01970 1234 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 NONOQ15233 471 aaKnown RBP eCLIP13.72□□□□□ -0.21
VPS16-208ENST00000487461 CSPP1Q1MSJ5 1256 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 CLLU1OSQ5K130 101 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 PDE12Q6L8Q7 609 aaKnown RBP13.72□□□□□ -0.21
VPS16-208ENST00000487461 KCNT2Q6UVM3 1135 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 KRT25Q7Z3Z0 450 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 ZNF598Q86UK7 904 aaKnown RBP13.72□□□□□ -0.21
VPS16-208ENST00000487461 FAM177A1Q8N128 213 aaPredicted RBP13.72□□□□□ -0.21
VPS16-208ENST00000487461 RNF169Q8NCN4 708 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 SMRP1Q8NCR6 262 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 VN1R2Q8NFZ6 395 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 SCLT1Q96NL6 688 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 POP1Q99575 1024 aaKnown RBP13.72□□□□□ -0.21
VPS16-208ENST00000487461 PHF20Q9BVI0 1012 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 GJB4Q9NTQ9 266 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 TPCN1Q9ULQ1 816 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 WDR81Q562E7 1941 aa13.72□□□□□ -0.21
VPS16-208ENST00000487461 A0A087WZ62 844 aa13.71□□□□□ -0.21
VPS16-208ENST00000487461 EOMESO95936 686 aa13.71□□□□□ -0.21
VPS16-208ENST00000487461 ATF7P17544 494 aaPredicted RBP13.71□□□□□ -0.21
VPS16-208ENST00000487461 HOXD11P31277 338 aaPredicted RBP13.71□□□□□ -0.21
VPS16-208ENST00000487461 PBX3P40426 434 aa13.71□□□□□ -0.21
VPS16-208ENST00000487461 PSMC5P62195 406 aa13.71□□□□□ -0.21
VPS16-208ENST00000487461 CDC42EP1Q00587 391 aa13.71□□□□□ -0.21
VPS16-208ENST00000487461 DUSP6Q16828 381 aa13.71□□□□□ -0.21
VPS16-208ENST00000487461 LETM2Q2VYF4 491 aa13.71□□□□□ -0.21
VPS16-208ENST00000487461 ANO5Q75V66 913 aa13.71□□□□□ -0.21
VPS16-208ENST00000487461 RNF135Q8IUD6 432 aa13.71□□□□□ -0.21
VPS16-208ENST00000487461 ABI1Q8IZP0 508 aa13.71□□□□□ -0.21
VPS16-208ENST00000487461 MRPS27Q92552 414 aaKnown RBP13.71□□□□□ -0.21
VPS16-208ENST00000487461 FDXACB1Q9BRP7 624 aaPredicted RBP13.71□□□□□ -0.21
VPS16-208ENST00000487461 GCOM2Q9BZD3 368 aaPredicted RBP13.71□□□□□ -0.21
VPS16-208ENST00000487461 SLKQ9H2G2 1235 aaPredicted RBP13.71□□□□□ -0.21
VPS16-208ENST00000487461 CHST12Q9NRB3 414 aa13.71□□□□□ -0.21
VPS16-208ENST00000487461 SUCLA2Q9P2R7 463 aaPredicted RBP13.71□□□□□ -0.21
VPS16-208ENST00000487461 PUF60Q9UHX1 559 aaKnown RBP13.71□□□□□ -0.21
VPS16-208ENST00000487461 MUTYHQ9UIF7 546 aa13.71□□□□□ -0.21
VPS16-208ENST00000487461 LZTS1Q9Y250 596 aa13.71□□□□□ -0.21
VPS16-208ENST00000487461 PLXNA4Q9HCM2 1894 aa13.7□□□□□ -0.22
VPS16-208ENST00000487461 PFKFB2O60825 505 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms