RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TMEM60Q9H2L4 133 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 SLITRK6Q9H5Y7 841 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 RPF1Q9H9Y2 349 aaKnown RBP17.61■□□□□ 0.41
COL7A1-210ENST00000487017 INTUQ9ULD6 942 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 CRLF3Q8IUI8 442 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 CEP95Q96GE4 821 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 TTC25Q96NG3 672 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.61■□□□□ 0.41
COL7A1-210ENST00000487017 NAALADL2Q58DX5 795 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 CXorf38Q8TB03 319 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 HEMGNQ9BXL5 484 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 A0A0G2JND7 137 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 FAM187AA6NFU0 413 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 STMN1P16949 149 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 GUCY1A2P33402 732 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 VSNL1P62760 191 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 ICE2Q659A1 982 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 PADI6Q6TGC4 694 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 ZNF564Q8TBZ8 553 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-210ENST00000487017 DRC3Q9H069 523 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 NOC2LQ9Y3T9 749 aaKnown RBP17.6■□□□□ 0.41
COL7A1-210ENST00000487017 ARHGEF40Q8TER5 1519 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 ART3Q13508 389 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 LRRC4Q9HBW1 653 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 PACSIN2Q9UNF0 486 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-210ENST00000487017 ABCA6Q8N139 1617 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 USP17L10C9JJH3 530 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 COPEO14579 308 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 ORC4O43929 436 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 ESRRGP62508 458 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 ZNF211Q13398 564 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-210ENST00000487017 MYLK4Q86YV6 388 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-210ENST00000487017 SLC44A5Q8NCS7 719 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 TRAIPQ9BWF2 469 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 EDEM3Q9BZQ6 932 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 INTS2Q9H0H0 1204 aaKnown RBP17.6■□□□□ 0.41
COL7A1-210ENST00000487017 MRPL46Q9H2W6 279 aaKnown RBP17.6■□□□□ 0.41
COL7A1-210ENST00000487017 ZNF609O15014 1411 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 CTIFO43310 598 aaKnown RBP17.6■□□□□ 0.41
COL7A1-210ENST00000487017 GH2P01242 217 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 DRAP1Q14919 205 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-210ENST00000487017 RABL6Q3YEC7 729 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-210ENST00000487017 FAM47EQ6ZV65 393 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 RSRC2Q7L4I2 434 aaKnown RBP17.6■□□□□ 0.41
COL7A1-210ENST00000487017 TTC13Q8NBP0 860 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 TTC17Q96AE7 1141 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 THOC1Q96FV9 657 aaKnown RBP17.6■□□□□ 0.41
COL7A1-210ENST00000487017 KLC2Q9H0B6 622 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 KIAA1586Q9HCI6 787 aa17.6■□□□□ 0.41
COL7A1-210ENST00000487017 FCER1AP12319 257 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 KRT39Q6A163 491 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 ATG9AQ7Z3C6 839 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 SPATA4Q8NEY3 305 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 DYDC2Q96IM9 177 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 NCAPGQ9BPX3 1015 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 NUP85Q9BW27 656 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 CCNA1P78396 465 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 MIGA2Q7L4E1 593 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 FIS1Q9Y3D6 152 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 POLR1AO95602 1720 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-210ENST00000487017 SCARF1Q14162 830 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 SRRM1Q8IYB3 904 aaKnown RBP17.59■□□□□ 0.41
COL7A1-210ENST00000487017 MORC4Q8TE76 937 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 AXIN2Q9Y2T1 843 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 SLC4A1P02730 911 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 BAG6P46379 1132 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 BZW1Q7L1Q6 419 aaKnown RBP17.59■□□□□ 0.41
COL7A1-210ENST00000487017 SETBP1Q9Y6X0 1596 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 NPR1P16066 1061 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 TMPRSS15P98073 1019 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 METTL23Q86XA0 190 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 ANGPTL3Q9Y5C1 460 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 MROH7-TTC4A0A0A0MT08 1334 aa17.59■□□□□ 0.41
COL7A1-210ENST00000487017 POTEFA5A3E0 1075 aa17.58■□□□□ 0.41
COL7A1-210ENST00000487017 PFDN1O60925 122 aa17.58■□□□□ 0.41
COL7A1-210ENST00000487017 TRPA1O75762 1119 aa17.58■□□□□ 0.41
COL7A1-210ENST00000487017 POTEIP0CG38 1075 aa17.58■□□□□ 0.41
COL7A1-210ENST00000487017 MTMR1Q13613 665 aa17.58■□□□□ 0.41
COL7A1-210ENST00000487017 ANKRD40Q6AI12 368 aa17.58■□□□□ 0.41
COL7A1-210ENST00000487017 POTEGQ6S5H5 508 aa17.58■□□□□ 0.41
COL7A1-210ENST00000487017 POTEEQ6S8J3 1075 aa17.58■□□□□ 0.41
COL7A1-210ENST00000487017 SIX6OS1Q8N1H7 587 aa17.58■□□□□ 0.41
COL7A1-210ENST00000487017 TMEM35BQ8NCS4 154 aa17.58■□□□□ 0.41
COL7A1-210ENST00000487017 NUDCD1Q96RS6 583 aa17.58■□□□□ 0.41
COL7A1-210ENST00000487017 ATP6V0A4Q9HBG4 840 aa17.58■□□□□ 0.41
COL7A1-210ENST00000487017 ITIH6Q6UXX5 1313 aa17.58■□□□□ 0.41
COL7A1-210ENST00000487017 CRB1P82279 1406 aa17.58■□□□□ 0.4
COL7A1-210ENST00000487017 CSPG5O95196 566 aa17.58■□□□□ 0.4
COL7A1-210ENST00000487017 FMR1Q06787 632 aaKnown RBP eCLIP17.58■□□□□ 0.4
COL7A1-210ENST00000487017 KLHL38Q2WGJ6 581 aa17.58■□□□□ 0.4
COL7A1-210ENST00000487017 XAB2Q9HCS7 855 aaKnown RBP17.58■□□□□ 0.4
COL7A1-210ENST00000487017 SEL1LQ9UBV2 794 aa17.58■□□□□ 0.4
COL7A1-210ENST00000487017 GYG2O15488 501 aa17.58■□□□□ 0.4
COL7A1-210ENST00000487017 SRGAP2CP0DJJ0 459 aa17.58■□□□□ 0.4
COL7A1-210ENST00000487017 VAMP7P51809 220 aa17.58■□□□□ 0.4
COL7A1-210ENST00000487017 CDO1Q16878 200 aa17.58■□□□□ 0.4
COL7A1-210ENST00000487017 DPP9Q86TI2 863 aa17.58■□□□□ 0.4
COL7A1-210ENST00000487017 POLE2P56282 527 aa17.58■□□□□ 0.4
COL7A1-210ENST00000487017 SLC12A1Q13621 1099 aa17.58■□□□□ 0.4
COL7A1-210ENST00000487017 MCPH1Q8NEM0 835 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms