RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ADAMTS10Q9H324 1103 aa16.46■□□□□ 0.23
USP4-212ENST00000486549 DHX33Q9H6R0 707 aaKnown RBP16.46■□□□□ 0.23
USP4-212ENST00000486549 YBX2Q9Y2T7 364 aaKnown RBP16.46■□□□□ 0.23
USP4-212ENST00000486549 SQORQ9Y6N5 450 aa16.46■□□□□ 0.23
USP4-212ENST00000486549 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.45■□□□□ 0.22
USP4-212ENST00000486549 USO1O60763 962 aaKnown RBP16.45■□□□□ 0.22
USP4-212ENST00000486549 UPP2O95045 317 aa16.45■□□□□ 0.22
USP4-212ENST00000486549 IBSPP21815 317 aaPredicted RBP16.45■□□□□ 0.22
USP4-212ENST00000486549 RARRES1P49788 294 aa16.45■□□□□ 0.22
USP4-212ENST00000486549 CEBPZQ03701 1054 aaKnown RBP16.45■□□□□ 0.22
USP4-212ENST00000486549 ZRSR1Q15695 479 aaKnown RBP16.45■□□□□ 0.22
USP4-212ENST00000486549 ECM1Q16610 540 aa16.45■□□□□ 0.22
USP4-212ENST00000486549 KRT79Q5XKE5 535 aa16.45■□□□□ 0.22
USP4-212ENST00000486549 KSR1Q8IVT5 923 aa16.45■□□□□ 0.22
USP4-212ENST00000486549 EXOC8Q8IYI6 725 aa16.45■□□□□ 0.22
USP4-212ENST00000486549 MYLIPQ8WY64 445 aa16.45■□□□□ 0.22
USP4-212ENST00000486549 NLRP4Q96MN2 994 aa16.45■□□□□ 0.22
USP4-212ENST00000486549 NACC1Q96RE7 527 aa16.45■□□□□ 0.22
USP4-212ENST00000486549 ATP6V0A4Q9HBG4 840 aa16.45■□□□□ 0.22
USP4-212ENST00000486549 CLIC4Q9Y696 253 aa16.45■□□□□ 0.22
USP4-212ENST00000486549 COL6A3P12111 3177 aa16.44■□□□□ 0.22
USP4-212ENST00000486549 TLL1O43897 1013 aa16.44■□□□□ 0.22
USP4-212ENST00000486549 BMP15O95972 392 aa16.44■□□□□ 0.22
USP4-212ENST00000486549 GRIN2CQ14957 1233 aa16.44■□□□□ 0.22
USP4-212ENST00000486549 ARL6IP4Q66PJ3 421 aaKnown RBP16.44■□□□□ 0.22
USP4-212ENST00000486549 FAM228AQ86W67 206 aa16.44■□□□□ 0.22
USP4-212ENST00000486549 ZSCAN16Q9H4T2 348 aaPredicted RBP16.44■□□□□ 0.22
USP4-212ENST00000486549 ERVK-5Q9HDB9 667 aa16.44■□□□□ 0.22
USP4-212ENST00000486549 XPNPEP1Q9NQW7 623 aa16.44■□□□□ 0.22
USP4-212ENST00000486549 DDX19AQ9NUU7 478 aaKnown RBP16.44■□□□□ 0.22
USP4-212ENST00000486549 ST3GAL5Q9UNP4 418 aa16.44■□□□□ 0.22
USP4-212ENST00000486549 KIAA1024Q9UPX6 916 aa16.44■□□□□ 0.22
USP4-212ENST00000486549 COL4A3BPQ9Y5P4 624 aa16.44■□□□□ 0.22
USP4-212ENST00000486549 STK24Q9Y6E0 443 aa16.44■□□□□ 0.22
USP4-212ENST00000486549 A0A087WZ62 844 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 ARHGEF35A5YM69 484 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 GPR182O15218 404 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 CSDE1O75534 798 aaKnown RBP16.43■□□□□ 0.22
USP4-212ENST00000486549 DGAT1O75907 488 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 CA3P07451 260 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 FGFR4P22455 802 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 EIF4BP23588 611 aaKnown RBP16.43■□□□□ 0.22
USP4-212ENST00000486549 ODR4Q5SWX8 454 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 PPP2R2DQ66LE6 453 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 MAEAQ7L5Y9 396 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.43■□□□□ 0.22
USP4-212ENST00000486549 ZNF710Q8N1W2 664 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 TCP11Q8WWU5 503 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 PRPF31Q8WWY3 499 aaKnown RBP16.43■□□□□ 0.22
USP4-212ENST00000486549 PSPC1Q8WXF1 523 aaKnown RBP16.43■□□□□ 0.22
USP4-212ENST00000486549 LINC01599Q8WXQ3 324 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 FDXACB1Q9BRP7 624 aaPredicted RBP16.43■□□□□ 0.22
USP4-212ENST00000486549 MMTAG2Q9BU76 263 aaKnown RBP16.43■□□□□ 0.22
USP4-212ENST00000486549 FTHL17Q9BXU8 183 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 GCOM2Q9BZD3 368 aaPredicted RBP16.43■□□□□ 0.22
USP4-212ENST00000486549 TMX1Q9H3N1 280 aa16.43■□□□□ 0.22
USP4-212ENST00000486549 DBR1Q9UK59 544 aaKnown RBP16.43■□□□□ 0.22
USP4-212ENST00000486549 ENPP3O14638 875 aa16.42■□□□□ 0.22
USP4-212ENST00000486549 GAS2O43903 313 aaKnown RBP16.42■□□□□ 0.22
USP4-212ENST00000486549 GJB5O95377 273 aa16.42■□□□□ 0.22
USP4-212ENST00000486549 SRGAP2CP0DJJ0 459 aa16.42■□□□□ 0.22
USP4-212ENST00000486549 XRCC6P12956 609 aaKnown RBP eCLIP16.42■□□□□ 0.22
USP4-212ENST00000486549 DARSP14868 501 aaKnown RBP16.42■□□□□ 0.22
USP4-212ENST00000486549 MUTP22033 750 aa16.42■□□□□ 0.22
USP4-212ENST00000486549 MARCKSP29966 332 aaPredicted RBP16.42■□□□□ 0.22
USP4-212ENST00000486549 CDC42EP1Q00587 391 aa16.42■□□□□ 0.22
USP4-212ENST00000486549 GRIN1Q05586 938 aa16.42■□□□□ 0.22
USP4-212ENST00000486549 PKP1Q13835 747 aa16.42■□□□□ 0.22
USP4-212ENST00000486549 BECN1Q14457 450 aa16.42■□□□□ 0.22
USP4-212ENST00000486549 FOXD4L6Q3SYB3 417 aaPredicted RBP16.42■□□□□ 0.22
USP4-212ENST00000486549 FOXD4L3Q6VB84 417 aaPredicted RBP16.42■□□□□ 0.22
USP4-212ENST00000486549 ZNF410Q86VK4 478 aa16.42■□□□□ 0.22
USP4-212ENST00000486549 USP28Q96RU2 1077 aa16.42■□□□□ 0.22
USP4-212ENST00000486549 PLIN2Q99541 437 aa16.42■□□□□ 0.22
USP4-212ENST00000486549 DENND3A2RUS2 1198 aa16.41■□□□□ 0.22
USP4-212ENST00000486549 LCHNA4D1U4 455 aa16.41■□□□□ 0.22
USP4-212ENST00000486549 E9PMD0 336 aa16.41■□□□□ 0.22
USP4-212ENST00000486549 MGEA5O60502 916 aa16.41■□□□□ 0.22
USP4-212ENST00000486549 ZSCAN22P10073 491 aaPredicted RBP16.41■□□□□ 0.22
USP4-212ENST00000486549 LAMTOR4Q0VGL1 99 aa16.41■□□□□ 0.22
USP4-212ENST00000486549 PTPAQ15257 358 aa16.41■□□□□ 0.22
USP4-212ENST00000486549 PADI6Q6TGC4 694 aa16.41■□□□□ 0.22
USP4-212ENST00000486549 RTN4RL1Q86UN2 441 aaPredicted RBP16.41■□□□□ 0.22
USP4-212ENST00000486549 CABP7Q86V35 215 aa16.41■□□□□ 0.22
USP4-212ENST00000486549 TOP1MTQ969P6 601 aa16.41■□□□□ 0.22
USP4-212ENST00000486549 CDK5RAP3Q96JB5 506 aa16.41■□□□□ 0.22
USP4-212ENST00000486549 POLR3FQ9H1D9 316 aaPredicted RBP16.41■□□□□ 0.22
USP4-212ENST00000486549 BHMT2Q9H2M3 363 aa16.41■□□□□ 0.22
USP4-212ENST00000486549 GPRC5CQ9NQ84 441 aa16.41■□□□□ 0.22
USP4-212ENST00000486549 TTC3P53804 2025 aa16.4■□□□□ 0.22
USP4-212ENST00000486549 F13A1P00488 732 aa16.4■□□□□ 0.22
USP4-212ENST00000486549 FAM102BQ5T8I3 360 aa16.4■□□□□ 0.22
USP4-212ENST00000486549 RNF149Q8NC42 400 aa16.4■□□□□ 0.22
USP4-212ENST00000486549 ASAP3Q8TDY4 903 aa16.4■□□□□ 0.22
USP4-212ENST00000486549 AK8Q96MA6 479 aa16.4■□□□□ 0.22
USP4-212ENST00000486549 YME1L1Q96TA2 773 aa16.4■□□□□ 0.22
USP4-212ENST00000486549 RAD9AQ99638 391 aa16.4■□□□□ 0.22
USP4-212ENST00000486549 ADAM2Q99965 735 aa16.4■□□□□ 0.22
USP4-212ENST00000486549 TSPYL2Q9H2G4 693 aaPredicted RBP16.4■□□□□ 0.22
USP4-212ENST00000486549 DNM3Q9UQ16 869 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms