RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 LIMA1Q9UHB6 759 aaKnown RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 AK9Q5TCS8 1911 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 ANO9A1A5B4 782 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 RGS16O15492 202 aaPredicted RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 LUC7L3O95232 432 aaKnown RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 CLTAP09496 248 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 PSMC5P62195 406 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 BAATQ14032 418 aaPredicted RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 E2F5Q15329 346 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 ZDHHC15Q96MV8 337 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 MIS12Q9H081 205 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 FBXO28Q9NVF7 368 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 HAUS2Q9NVX0 235 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 LOC102724159A0A0B4J2E5 919 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 CAPN9O14815 690 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 WDR46O15213 610 aaKnown RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 RNF8O76064 485 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 TRIM49P0CI25 452 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 TRIM49CP0CI26 452 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 SFNP31947 248 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 HUNKP57058 714 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 CORO7P57737 925 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 GFPT1Q06210 699 aaPredicted RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 DDR1Q08345 913 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 PWP2Q15269 919 aaKnown RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 PKN1Q16512 942 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 CCDC197Q8NCU1 140 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 AGBL3Q8NEM8 1001 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 ACER1Q8TDN7 264 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 TBC1D31Q96DN5 1066 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 FAM49AQ9H0Q0 323 aaPredicted RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 GOLGA8SH3BPF8 625 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 PGRMC1O00264 195 aaKnown RBP11.87□□□□□ -0.51
HDAC6-228ENST00000486227 STK10O94804 968 aaKnown RBP11.87□□□□□ -0.51
HDAC6-228ENST00000486227 MRPS25P82663 173 aaKnown RBP11.87□□□□□ -0.51
HDAC6-228ENST00000486227 SF3A3Q12874 501 aaKnown RBP eCLIP11.87□□□□□ -0.512e-7■■■□□ 16.8
HDAC6-228ENST00000486227 PDCLQ13371 301 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 LPAR1Q92633 364 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 MYOZ2Q9NPC6 264 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 A0A1W2PQC6 194 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 DDTLA6NHG4 134 aaPredicted RBP11.87□□□□□ -0.51
HDAC6-228ENST00000486227 HMGB1P1B2RPK0 211 aaPredicted RBP11.87□□□□□ -0.51
HDAC6-228ENST00000486227 SRGAP2O75044 1071 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 HIP1RO75146 1068 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 NFX1Q12986 1120 aaKnown RBP11.87□□□□□ -0.51
HDAC6-228ENST00000486227 TTLL4Q14679 1199 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 COG2Q14746 738 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 CCDC38Q502W7 563 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 C10orf76Q5T2E6 689 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 TAB3Q8N5C8 712 aaPredicted RBP11.87□□□□□ -0.51
HDAC6-228ENST00000486227 FAM167AQ96KS9 214 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 MMP19Q99542 508 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 FUT8Q9BYC5 575 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 ZNF148Q9UQR1 794 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 KIF1AQ12756 1690 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 ARHGEF37A1IGU5 675 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 C19orf81C9J6K1 198 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 RAET1EQ8TD07 263 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 WHAMMQ8TF30 809 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 RSAD2Q8WXG1 361 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 YY1AP1Q9H869 796 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 VPS37BQ9H9H4 285 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 HOMER3Q9NSC5 361 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 FAM217BQ9NTX9 383 aaPredicted RBP11.87□□□□□ -0.51
HDAC6-228ENST00000486227 ANKRD26Q9UPS8 1709 aa11.87□□□□□ -0.51
HDAC6-228ENST00000486227 TARSL2A2RTX5 802 aaKnown RBP11.86□□□□□ -0.51
HDAC6-228ENST00000486227 ECE1P42892 770 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 SNAPC2Q13487 334 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 FAM213AQ9BRX8 229 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 IL17RBQ9NRM6 502 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 HPSEQ9Y251 543 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 PTPN22Q9Y2R2 807 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 PCDHA10Q9Y5I2 948 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 STAMBPO95630 424 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 FXR1P51114 621 aaKnown RBP eCLIP11.86□□□□□ -0.51
HDAC6-228ENST00000486227 KRT81Q14533 505 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 SLFN12LQ6IEE8 588 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 SCARA5Q6ZMJ2 495 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 STMN2Q93045 179 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 ZNF668Q96K58 619 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-228ENST00000486227 CHP1Q99653 195 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 IRX2Q9BZI1 471 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-228ENST00000486227 DEFB129Q9H1M3 183 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 SLC37A4O43826 429 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 RPSAP08865 295 aaKnown RBP11.86□□□□□ -0.51
HDAC6-228ENST00000486227 KRT15P19012 456 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 NR1I3Q14994 352 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 RBBP5Q15291 538 aaKnown RBP11.86□□□□□ -0.51
HDAC6-228ENST00000486227 C9orf131Q5VYM1 1079 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 HAUS6Q7Z4H7 955 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 DAGLBQ8NCG7 672 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 SAAL1Q96ER3 474 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 AGBL1Q96MI9 1066 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 REEP2Q9BRK0 252 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 RGL2O15211 777 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 PEX19P40855 299 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 METTL23Q86XA0 190 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 ZNF280CQ8ND82 737 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 ZBED2Q9BTP6 218 aa11.86□□□□□ -0.51
HDAC6-228ENST00000486227 TUFT1Q9NNX1 390 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms