RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 PARD3BQ8TEW8 1205 aa4.89□□□□□ -1.63
VPS41-212ENST00000482217 MTMR8Q96EF0 704 aa4.89□□□□□ -1.63
VPS41-212ENST00000482217 TSPAN17Q96FV3 270 aa4.89□□□□□ -1.63
VPS41-212ENST00000482217 PAWRQ96IZ0 340 aaKnown RBP4.89□□□□□ -1.63
VPS41-212ENST00000482217 SCLT1Q96NL6 688 aa4.89□□□□□ -1.63
VPS41-212ENST00000482217 ELAC2Q9BQ52 826 aaKnown RBP4.89□□□□□ -1.63
VPS41-212ENST00000482217 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.89□□□□□ -1.63
VPS41-212ENST00000482217 PLCB1Q9NQ66 1216 aa4.89□□□□□ -1.63
VPS41-212ENST00000482217 SH3GLB2Q9NR46 395 aa4.89□□□□□ -1.63
VPS41-212ENST00000482217 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.89□□□□□ -1.63
VPS41-212ENST00000482217 ZNF180Q9UJW8 692 aa4.89□□□□□ -1.63
VPS41-212ENST00000482217 ZKSCAN5Q9Y2L8 839 aa4.89□□□□□ -1.63
VPS41-212ENST00000482217 TCRBV5S4A2TA0A5A2 114 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 SLC12A8A0AV02 714 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 ZC3H12DA2A288 527 aaKnown RBP4.88□□□□□ -1.63
VPS41-212ENST00000482217 PABPN1LA6NDY0 278 aaKnown RBP4.88□□□□□ -1.63
VPS41-212ENST00000482217 F8W031 263 aaPredicted RBP4.88□□□□□ -1.63
VPS41-212ENST00000482217 NFIBO00712 420 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 SGSM2O43147 1006 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 ZEB2O60315 1214 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 BRINP1O60477 761 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 INMTO95050 263 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 MED14OSP0DP75 135 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 GLDCP23378 1020 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 EPHA5P54756 1037 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 YBX1P67809 324 aaKnown RBP4.88□□□□□ -1.63
VPS41-212ENST00000482217 OCRLQ01968 901 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 DSG1Q02413 1049 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 DDX10Q13206 875 aaKnown RBP4.88□□□□□ -1.63
VPS41-212ENST00000482217 RAB3GAP1Q15042 981 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 ZNF124Q15973 351 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 KRTAP19-4Q3LI73 84 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 TUBB8Q3ZCM7 444 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 KIAA1614Q5VZ46 1190 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 RPTNQ6XPR3 784 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 C1orf122Q6ZSJ8 110 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 EP400NLQ6ZTU2 488 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 KCTD1Q719H9 257 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 TPH2Q8IWU9 490 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 SH3RF2Q8TEC5 729 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 ATRIPQ8WXE1 791 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 USP7Q93009 1102 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 ZNF496Q96IT1 587 aaPredicted RBP4.88□□□□□ -1.63
VPS41-212ENST00000482217 BOCQ9BWV1 1114 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 SMURF1Q9HCE7 757 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 MYOTQ9UBF9 498 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 DBR1Q9UK59 544 aaKnown RBP4.88□□□□□ -1.63
VPS41-212ENST00000482217 PALD1Q9ULE6 856 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 TMCC3Q9ULS5 477 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 SRPK3Q9UPE1 567 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 FAM50BQ9Y247 325 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 PCDHB4Q9Y5E5 795 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 DGKBQ9Y6T7 804 aa4.88□□□□□ -1.63
VPS41-212ENST00000482217 ARID1BQ8NFD5 2236 aaPredicted RBP4.87□□□□□ -1.63
VPS41-212ENST00000482217 TCRBV5S2A0A599 114 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 PTPDC1A2A3K4 754 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 TRIM64CA6NLI5 447 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 NUDT19A8MXV4 375 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 C19orf81C9J6K1 198 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 MAN2B1O00754 1011 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 CLASP2O75122 1294 aaKnown RBP4.87□□□□□ -1.63
VPS41-212ENST00000482217 SEMA7AO75326 666 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 HMMRO75330 724 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 BAIAP3O94812 1187 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 ABLIM3O94929 683 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 HSP90AB1P08238 724 aaKnown RBP4.87□□□□□ -1.63
VPS41-212ENST00000482217 TMEM253P0C7T8 217 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 ZSCAN20P17040 1043 aaPredicted RBP4.87□□□□□ -1.63
VPS41-212ENST00000482217 BPIP17213 487 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 KRT15P19012 456 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 GJA4P35212 333 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 STT3AP46977 705 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 ITKQ08881 620 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 STRN3Q13033 797 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 STK3Q13188 491 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 COBLL1Q53SF7 1204 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 FAM133BQ5BKY9 247 aaKnown RBP4.87□□□□□ -1.63
VPS41-212ENST00000482217 DACT2Q5SW24 774 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 XRRA1Q6P2D8 792 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 C1orf228Q6PIY5 440 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 ZC3H14Q6PJT7 736 aaKnown RBP4.87□□□□□ -1.63
VPS41-212ENST00000482217 MILR1Q7Z6M3 343 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 PTRH1Q86Y79 214 aaKnown RBP4.87□□□□□ -1.63
VPS41-212ENST00000482217 ZNF713Q8N859 430 aaPredicted RBP4.87□□□□□ -1.63
VPS41-212ENST00000482217 SMC1BQ8NDV3 1235 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 TTLL11Q8NHH1 800 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 TOX2Q96NM4 488 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 TTC1Q99614 292 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 OSBPL5Q9H0X9 879 aaPredicted RBP4.87□□□□□ -1.63
VPS41-212ENST00000482217 KLHL14Q9P2G3 628 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 ASH2LQ9UBL3 628 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 ODF2LQ9ULJ1 636 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 PHTF1Q9UMS5 762 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 PHLDB1Q86UU1 1377 aa4.87□□□□□ -1.63
VPS41-212ENST00000482217 SLC27A2O14975 620 aa4.86□□□□□ -1.63
VPS41-212ENST00000482217 PIK3CAP42336 1068 aa4.86□□□□□ -1.63
VPS41-212ENST00000482217 RXRGP48443 463 aa4.86□□□□□ -1.63
VPS41-212ENST00000482217 LSSP48449 732 aa4.86□□□□□ -1.63
VPS41-212ENST00000482217 EIF5P55010 431 aaKnown RBP4.86□□□□□ -1.63
VPS41-212ENST00000482217 ZNF280AP59817 542 aaPredicted RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms