RNA–Protein interactions for RNA: ENST00000479051.1

VARS-224, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 612 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-224ENST00000479051 USP28Q96RU2 1077 aa22.8■■□□□ 1.24
VARS-224ENST00000479051 INO80BQ9C086 356 aaPredicted RBP22.8■■□□□ 1.24
VARS-224ENST00000479051 CDHR5Q9HBB8 845 aa22.8■■□□□ 1.24
VARS-224ENST00000479051 COL4A3BPQ9Y5P4 624 aa22.8■■□□□ 1.24
VARS-224ENST00000479051 A0A087WWV3 80 aa22.79■■□□□ 1.24
VARS-224ENST00000479051 USO1O60763 962 aaKnown RBP22.79■■□□□ 1.24
VARS-224ENST00000479051 MXD4Q14582 209 aaPredicted RBP22.79■■□□□ 1.24
VARS-224ENST00000479051 PTPAQ15257 358 aa22.79■■□□□ 1.24
VARS-224ENST00000479051 FAM109BQ6ICB4 259 aaPredicted RBP22.79■■□□□ 1.24
VARS-224ENST00000479051 CABP7Q86V35 215 aa22.79■■□□□ 1.24
VARS-224ENST00000479051 HERC6Q8IVU3 1022 aa22.79■■□□□ 1.24
VARS-224ENST00000479051 NLRP4Q96MN2 994 aa22.79■■□□□ 1.24
VARS-224ENST00000479051 NOC2LQ9Y3T9 749 aaKnown RBP22.79■■□□□ 1.24
VARS-224ENST00000479051 GRXCR1A8MXD5 290 aa22.78■■□□□ 1.24
VARS-224ENST00000479051 DARSP14868 501 aaKnown RBP22.78■■□□□ 1.24
VARS-224ENST00000479051 DEFB103AP81534 67 aa22.78■■□□□ 1.24
VARS-224ENST00000479051 STK38Q15208 465 aa22.78■■□□□ 1.24
VARS-224ENST00000479051 MICAL3Q7RTP6 2002 aa22.78■■□□□ 1.24
VARS-224ENST00000479051 MYOCDQ8IZQ8 938 aa22.78■■□□□ 1.24
VARS-224ENST00000479051 RASSF8Q8NHQ8 419 aa22.78■■□□□ 1.24
VARS-224ENST00000479051 TMEM40Q8WWA1 233 aa22.78■■□□□ 1.24
VARS-224ENST00000479051 PRPF31Q8WWY3 499 aaKnown RBP22.78■■□□□ 1.24
VARS-224ENST00000479051 CALML4Q96GE6 196 aa22.78■■□□□ 1.24
VARS-224ENST00000479051 ZNF668Q96K58 619 aaPredicted RBP22.78■■□□□ 1.24
VARS-224ENST00000479051 ZBED2Q9BTP6 218 aa22.78■■□□□ 1.24
VARS-224ENST00000479051 MMTAG2Q9BU76 263 aaKnown RBP22.78■■□□□ 1.24
VARS-224ENST00000479051 ERVK-5Q9HDB9 667 aa22.78■■□□□ 1.24
VARS-224ENST00000479051 MORC2Q9Y6X9 1032 aaPredicted RBP22.78■■□□□ 1.24
VARS-224ENST00000479051 A0A087WZ62 844 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 EYA4O95677 639 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 DNAJB2P25686 324 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 MARCKSP29966 332 aaPredicted RBP22.77■■□□□ 1.24
VARS-224ENST00000479051 NASPP49321 788 aaPredicted RBP22.77■■□□□ 1.24
VARS-224ENST00000479051 TFDP1Q14186 410 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 SLC39A14Q15043 492 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 ECM1Q16610 540 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 HYIQ5T013 277 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 ATL3Q6DD88 541 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 PADI6Q6TGC4 694 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.77■■□□□ 1.243e-7■□□□□ 9.7
VARS-224ENST00000479051 FDXACB1Q9BRP7 624 aaPredicted RBP22.77■■□□□ 1.24
VARS-224ENST00000479051 PBX4Q9BYU1 374 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 BHMT2Q9H2M3 363 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 XPNPEP1Q9NQW7 623 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 ST3GAL5Q9UNP4 418 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 PCDHA11Q9Y5I1 949 aa22.77■■□□□ 1.24
VARS-224ENST00000479051 SRPRBQ9Y5M8 271 aaKnown RBP22.77■■□□□ 1.24
VARS-224ENST00000479051 LOXHD1Q8IVV2 1947 aa22.76■■□□□ 1.23
VARS-224ENST00000479051 TMEM265A0A087WTH1 108 aa22.76■■□□□ 1.23
VARS-224ENST00000479051 SFPQP23246 707 aaKnown RBP eCLIP22.76■■□□□ 1.23
VARS-224ENST00000479051 TXLNAP40222 546 aa22.76■■□□□ 1.23
VARS-224ENST00000479051 LAMTOR4Q0VGL1 99 aa22.76■■□□□ 1.23
VARS-224ENST00000479051 PKP1Q13835 747 aa22.76■■□□□ 1.23
VARS-224ENST00000479051 ZNF697Q5TEC3 545 aa22.76■■□□□ 1.23
VARS-224ENST00000479051 FAM228AQ86W67 206 aa22.76■■□□□ 1.23
VARS-224ENST00000479051 TIFAQ96CG3 184 aa22.76■■□□□ 1.23
VARS-224ENST00000479051 RNF216Q9NWF9 866 aaPredicted RBP22.76■■□□□ 1.23
VARS-224ENST00000479051 MYH15Q9Y2K3 1946 aa22.75■■□□□ 1.23
VARS-224ENST00000479051 DENND3A2RUS2 1198 aa22.75■■□□□ 1.23
VARS-224ENST00000479051 TLL1O43897 1013 aa22.75■■□□□ 1.23
VARS-224ENST00000479051 YEATS4O95619 227 aa22.75■■□□□ 1.23
VARS-224ENST00000479051 SRGAP2CP0DJJ0 459 aa22.75■■□□□ 1.23
VARS-224ENST00000479051 CYP11B2P19099 503 aa22.75■■□□□ 1.23
VARS-224ENST00000479051 RABGGTBP53611 331 aa22.75■■□□□ 1.23
VARS-224ENST00000479051 KSR1Q8IVT5 923 aa22.75■■□□□ 1.23
VARS-224ENST00000479051 KRI1Q8N9T8 703 aaKnown RBP22.75■■□□□ 1.23
VARS-224ENST00000479051 POLR3FQ9H1D9 316 aaPredicted RBP22.75■■□□□ 1.23
VARS-224ENST00000479051 TFIP11Q9UBB9 837 aaKnown RBP22.75■■□□□ 1.23
VARS-224ENST00000479051 FBXO2Q9UK22 296 aaPredicted RBP22.75■■□□□ 1.23
VARS-224ENST00000479051 CFAP45Q9UL16 551 aa22.75■■□□□ 1.23
VARS-224ENST00000479051 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.74■■□□□ 1.23
VARS-224ENST00000479051 E9PMD0 336 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 ENPP3O14638 875 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 GJB5O95377 273 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 BRD1O95696 1058 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 ZSCAN20P17040 1043 aaPredicted RBP22.74■■□□□ 1.23
VARS-224ENST00000479051 ARL2P36404 184 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 PHKA2P46019 1235 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 FOXD4L6Q3SYB3 417 aaPredicted RBP22.74■■□□□ 1.23
VARS-224ENST00000479051 FAM102BQ5T8I3 360 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 FOXD4L3Q6VB84 417 aaPredicted RBP22.74■■□□□ 1.23
VARS-224ENST00000479051 MAEAQ7L5Y9 396 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 SRGAP1Q7Z6B7 1085 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 RNF149Q8NC42 400 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 LINC00301Q8NCQ3 95 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 CSRNP2Q9H175 543 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 TSPYL2Q9H2G4 693 aaPredicted RBP22.74■■□□□ 1.23
VARS-224ENST00000479051 C1orf112Q9NSG2 853 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 DAXXQ9UER7 740 aaPredicted RBP22.74■■□□□ 1.23
VARS-224ENST00000479051 CCDC39Q9UFE4 941 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 ATP6V1DQ9Y5K8 247 aa22.74■■□□□ 1.23
VARS-224ENST00000479051 SPTLC2O15270 562 aa22.73■■□□□ 1.23
VARS-224ENST00000479051 PBX2P40425 430 aa22.73■■□□□ 1.23
VARS-224ENST00000479051 GRIN1Q05586 938 aa22.73■■□□□ 1.23
VARS-224ENST00000479051 GRB10Q13322 594 aa22.73■■□□□ 1.23
VARS-224ENST00000479051 TOP1MTQ969P6 601 aa22.73■■□□□ 1.23
VARS-224ENST00000479051 PNMA5Q96PV4 448 aa22.73■■□□□ 1.23
VARS-224ENST00000479051 RAD9AQ99638 391 aa22.73■■□□□ 1.23
VARS-224ENST00000479051 CCSER1Q9C0I3 900 aa22.73■■□□□ 1.23
VARS-224ENST00000479051 TMX1Q9H3N1 280 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms