RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 STK33Q9BYT3 514 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 EMSYQ7Z589 1322 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 LRRC10BA6NIK2 292 aa15.77■□□□□ 0.12
HDAC6-220ENST00000477528 PODXLO00592 558 aa15.77■□□□□ 0.12
HDAC6-220ENST00000477528 KRT39Q6A163 491 aa15.77■□□□□ 0.12
HDAC6-220ENST00000477528 PLAAQ9Y263 795 aa15.77■□□□□ 0.12
HDAC6-220ENST00000477528 WDR46O15213 610 aaKnown RBP15.77■□□□□ 0.12
HDAC6-220ENST00000477528 HOXA10P31260 410 aaPredicted RBP15.77■□□□□ 0.12
HDAC6-220ENST00000477528 MSTO1Q9BUK6 570 aa15.77■□□□□ 0.12
HDAC6-220ENST00000477528 ZNF408Q9H9D4 720 aa15.77■□□□□ 0.12
HDAC6-220ENST00000477528 UBE4BO95155 1302 aa15.77■□□□□ 0.12
HDAC6-220ENST00000477528 MSH4O15457 936 aa15.77■□□□□ 0.11
HDAC6-220ENST00000477528 SLC9A1P19634 815 aa15.77■□□□□ 0.11
HDAC6-220ENST00000477528 TMOD1P28289 359 aa15.77■□□□□ 0.11
HDAC6-220ENST00000477528 SHMT1P34896 483 aa15.77■□□□□ 0.11
HDAC6-220ENST00000477528 FMO5P49326 533 aa15.77■□□□□ 0.11
HDAC6-220ENST00000477528 KAZNQ674X7 775 aa15.77■□□□□ 0.11
HDAC6-220ENST00000477528 ANKRD36BP1Q96IX9 119 aa15.77■□□□□ 0.11
HDAC6-220ENST00000477528 MKNK1Q9BUB5 465 aa15.77■□□□□ 0.11
HDAC6-220ENST00000477528 HOXC10Q9NYD6 342 aa15.77■□□□□ 0.11
HDAC6-220ENST00000477528 BAZ2BQ9UIF8 2168 aaKnown RBP15.77■□□□□ 0.11
HDAC6-220ENST00000477528 ESYT3A0FGR9 886 aa15.77■□□□□ 0.11
HDAC6-220ENST00000477528 CCNI2Q6ZMN8 369 aaPredicted RBP15.77■□□□□ 0.11
HDAC6-220ENST00000477528 RIT2Q99578 217 aa15.77■□□□□ 0.11
HDAC6-220ENST00000477528 FHOD1Q9Y613 1164 aa15.77■□□□□ 0.11
HDAC6-220ENST00000477528 ZHX2Q9Y6X8 837 aa15.77■□□□□ 0.11
HDAC6-220ENST00000477528 PFASO15067 1338 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 INO80B-WBP1J3KQ70 363 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 RNF8O76064 485 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 SNX1Q13596 522 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 NAB2Q15742 525 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 STXBP2Q15833 593 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 TRAPPC11Q7Z392 1133 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 GMCL1Q96IK5 515 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 WRNIP1Q96S55 665 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 INO80BQ9C086 356 aaPredicted RBP15.76■□□□□ 0.11
HDAC6-220ENST00000477528 TAF1DQ9H5J8 278 aaPredicted RBP15.76■□□□□ 0.11
HDAC6-220ENST00000477528 SLITRK6Q9H5Y7 841 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 CNOT10Q9H9A5 744 aaKnown RBP15.76■□□□□ 0.11
HDAC6-220ENST00000477528 GABBR1Q9UBS5 961 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 NOC2LQ9Y3T9 749 aaKnown RBP15.76■□□□□ 0.11
HDAC6-220ENST00000477528 MED24O75448 989 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 PHBP35232 272 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 CCDC13Q8IYE1 715 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 CNOT8Q9UFF9 292 aaKnown RBP15.76■□□□□ 0.11
HDAC6-220ENST00000477528 TFR2Q9UP52 801 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 FAM169AQ9Y6X4 670 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 KCPQ6ZWJ8 1503 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 FTLP02792 175 aaPredicted RBP15.76■□□□□ 0.11
HDAC6-220ENST00000477528 YWHABP31946 246 aaKnown RBP15.76■□□□□ 0.11
HDAC6-220ENST00000477528 SREBF1P36956 1147 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 SURF1Q15526 300 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 CCDC14Q49A88 953 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 CERKQ8TCT0 537 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 DDX47Q9H0S4 455 aaKnown RBP15.76■□□□□ 0.11
HDAC6-220ENST00000477528 INTS9Q9NV88 658 aaKnown RBP15.76■□□□□ 0.11
HDAC6-220ENST00000477528 APEX2Q9UBZ4 518 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 PCDHA10Q9Y5I2 948 aa15.76■□□□□ 0.11
HDAC6-220ENST00000477528 SPEF2Q9C093 1822 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 CAPN7Q9Y6W3 813 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 GAKO14976 1311 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 POLRMTO00411 1230 aaKnown RBP15.75■□□□□ 0.11
HDAC6-220ENST00000477528 ECM2O94769 699 aaPredicted RBP15.75■□□□□ 0.11
HDAC6-220ENST00000477528 STK10O94804 968 aaKnown RBP15.75■□□□□ 0.11
HDAC6-220ENST00000477528 PLEKP08567 350 aaPredicted RBP15.75■□□□□ 0.11
HDAC6-220ENST00000477528 LGSNQ5TDP6 509 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 KIAA0895Q8NCT3 520 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 GMCL1P1Q8NEA9 526 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 NOVA2Q9UNW9 492 aaKnown RBP15.75■□□□□ 0.11
HDAC6-220ENST00000477528 VEGFAP15692 232 aaPredicted RBP15.75■□□□□ 0.11
HDAC6-220ENST00000477528 CCDC6Q16204 474 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 KLHDC7AQ5VTJ3 777 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 DNAJC24Q6P3W2 148 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 COL23A1Q86Y22 540 aaPredicted RBP15.75■□□□□ 0.11
HDAC6-220ENST00000477528 MORC4Q8TE76 937 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 INTS13Q9NVM9 706 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 MXRA7P84157 204 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 TFAMQ00059 246 aaKnown RBP15.75■□□□□ 0.11
HDAC6-220ENST00000477528 LLGL1Q15334 1064 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 PALM2Q8IXS6 379 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 AGPAT1Q99943 283 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 FBXO40Q9UH90 709 aa15.75■□□□□ 0.11
HDAC6-220ENST00000477528 SART1O43290 800 aaKnown RBP15.74■□□□□ 0.11
HDAC6-220ENST00000477528 LIG3P49916 1009 aa15.74■□□□□ 0.11
HDAC6-220ENST00000477528 YARSP54577 528 aaKnown RBP15.74■□□□□ 0.11
HDAC6-220ENST00000477528 GRIK5Q16478 980 aa15.74■□□□□ 0.11
HDAC6-220ENST00000477528 MMGT1Q8N4V1 131 aa15.74■□□□□ 0.11
HDAC6-220ENST00000477528 PNMA5Q96PV4 448 aa15.74■□□□□ 0.11
HDAC6-220ENST00000477528 MXRA8Q9BRK3 442 aa15.74■□□□□ 0.11
HDAC6-220ENST00000477528 FAM213AQ9BRX8 229 aa15.74■□□□□ 0.11
HDAC6-220ENST00000477528 ANAPC5Q9UJX4 755 aa15.74■□□□□ 0.11
HDAC6-220ENST00000477528 SCINQ9Y6U3 715 aa15.74■□□□□ 0.11
HDAC6-220ENST00000477528 NID2Q14112 1375 aa15.74■□□□□ 0.11
HDAC6-220ENST00000477528 HERVK_113P62684 666 aa15.74■□□□□ 0.11
HDAC6-220ENST00000477528 RASA3Q14644 834 aa15.74■□□□□ 0.11
HDAC6-220ENST00000477528 SWSAP1Q6NVH7 229 aa15.74■□□□□ 0.11
HDAC6-220ENST00000477528 SPATA20Q8TB22 786 aa15.74■□□□□ 0.11
HDAC6-220ENST00000477528 DUSP9Q99956 384 aaKnown RBP15.74■□□□□ 0.11
HDAC6-220ENST00000477528 RPAP3Q9H6T3 665 aaPredicted RBP15.74■□□□□ 0.11
HDAC6-220ENST00000477528 ATF5Q9Y2D1 282 aaPredicted RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms