RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 FAM167AQ96KS9 214 aa14.29□□□□□ -0.12
SKA3-206ENST00000475251 PPP1R16BQ96T49 567 aa14.29□□□□□ -0.12
SKA3-206ENST00000475251 MFSD1Q9H3U5 465 aa14.29□□□□□ -0.12
SKA3-206ENST00000475251 DZANK1Q9NVP4 752 aa14.29□□□□□ -0.12
SKA3-206ENST00000475251 MAFBQ9Y5Q3 323 aaPredicted RBP14.29□□□□□ -0.12
SKA3-206ENST00000475251 ZBTB42B2RXF5 422 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 C2CD4DB7Z1M9 353 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 BRD1O95696 1058 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 EOMESO95936 686 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 PDGFBP01127 241 aaPredicted RBP14.28□□□□□ -0.12
SKA3-206ENST00000475251 VTNP04004 478 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 PSAPP07602 524 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 EIF4BP23588 611 aaKnown RBP14.28□□□□□ -0.12
SKA3-206ENST00000475251 CA8P35219 290 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 ALDH7A1P49419 539 aaKnown RBP14.28□□□□□ -0.12
SKA3-206ENST00000475251 ATAT1Q5SQI0 421 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 ASTLQ6HA08 431 aaPredicted RBP14.28□□□□□ -0.12
SKA3-206ENST00000475251 LRRC55Q6ZSA7 311 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 ECHDC2Q86YB7 292 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 RAB11FIP4Q86YS3 637 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 ZDHHC14Q8IZN3 488 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 SLC39A11Q8N1S5 342 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 CNTNAP5Q8WYK1 1306 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 TMEM169Q96HH4 297 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 ZNF577Q9BSK1 485 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 POMKQ9H5K3 350 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 BARHL2Q9NY43 387 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 DACT1Q9NYF0 836 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 AKT3Q9Y243 479 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 USTQ9Y2C2 406 aa14.28□□□□□ -0.12
SKA3-206ENST00000475251 EVPLQ92817 2033 aa14.27□□□□□ -0.12
SKA3-206ENST00000475251 PLXNA3P51805 1871 aa14.27□□□□□ -0.12
SKA3-206ENST00000475251 PRR23AA6NEV1 266 aa14.27□□□□□ -0.13
SKA3-206ENST00000475251 C2orf71A6NGG8 1288 aa14.27□□□□□ -0.13
SKA3-206ENST00000475251 CLK2P49760 499 aaKnown RBP14.27□□□□□ -0.13
SKA3-206ENST00000475251 CLCN5P51795 746 aa14.27□□□□□ -0.13
SKA3-206ENST00000475251 NLRP11P59045 1033 aaKnown RBP14.27□□□□□ -0.13
SKA3-206ENST00000475251 RTN1Q16799 776 aa14.27□□□□□ -0.13
SKA3-206ENST00000475251 KIAA1841Q6NSI8 718 aa14.27□□□□□ -0.13
SKA3-206ENST00000475251 TYW1BQ6NUM6 668 aa14.27□□□□□ -0.13
SKA3-206ENST00000475251 RNF169Q8NCN4 708 aa14.27□□□□□ -0.13
SKA3-206ENST00000475251 DBR1Q9UK59 544 aaKnown RBP14.27□□□□□ -0.13
SKA3-206ENST00000475251 PCDHA10Q9Y5I2 948 aa14.27□□□□□ -0.13
SKA3-206ENST00000475251 A0A0U1RQF3 1178 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 FAM86B1E9PN63 330 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 SLC27A2O14975 620 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 DHX15O43143 795 aaKnown RBP14.26□□□□□ -0.13
SKA3-206ENST00000475251 ZBTB43O43298 467 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 CLASP2O75122 1294 aaKnown RBP14.26□□□□□ -0.13
SKA3-206ENST00000475251 CYP3A4P08684 503 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 FAM86B2P0C5J1 330 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 ATP4AP20648 1035 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 PBX3P40426 434 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 CLCN3P51790 818 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 CDC42EP1Q00587 391 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 RNF20Q5VTR2 975 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 EFCAB12Q6NXP0 572 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 APOA5Q6Q788 366 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 ASCL5Q7RTU5 278 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 TMEM105Q8N8V8 129 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 NKD2Q969F2 451 aaPredicted RBP14.26□□□□□ -0.13
SKA3-206ENST00000475251 SCLT1Q96NL6 688 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 RNF19AQ9NV58 838 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 STK39Q9UEW8 545 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 SAMM50Q9Y512 469 aa14.26□□□□□ -0.13
SKA3-206ENST00000475251 V9GY48 417 aaPredicted RBP14.26□□□□□ -0.13
SKA3-206ENST00000475251 MYH9P35579 1960 aaKnown RBP14.25□□□□□ -0.13
SKA3-206ENST00000475251 CFAP54Q96N23 3096 aa14.25□□□□□ -0.13
SKA3-206ENST00000475251 IGLV3-22A0A075B6J6 115 aa14.25□□□□□ -0.13
SKA3-206ENST00000475251 CXCL14O95715 111 aa14.25□□□□□ -0.13
SKA3-206ENST00000475251 METAP2P50579 478 aaKnown RBP eCLIP14.25□□□□□ -0.13
SKA3-206ENST00000475251 POLGP54098 1239 aaPredicted RBP14.25□□□□□ -0.13
SKA3-206ENST00000475251 CLLU1OSQ5K130 101 aa14.25□□□□□ -0.13
SKA3-206ENST00000475251 RARS2Q5T160 578 aaKnown RBP14.25□□□□□ -0.13
SKA3-206ENST00000475251 CREB3L3Q68CJ9 461 aa14.25□□□□□ -0.13
SKA3-206ENST00000475251 ERMP1Q7Z2K6 904 aa14.25□□□□□ -0.13
SKA3-206ENST00000475251 TRMT1LQ7Z2T5 733 aaKnown RBP14.25□□□□□ -0.13
SKA3-206ENST00000475251 PPFIBP1Q86W92 1011 aa14.25□□□□□ -0.13
SKA3-206ENST00000475251 HELQQ8TDG4 1101 aa14.25□□□□□ -0.13
SKA3-206ENST00000475251 CCDC12Q8WUD4 166 aaPredicted RBP14.25□□□□□ -0.13
SKA3-206ENST00000475251 ACSF2Q96CM8 615 aaPredicted RBP14.25□□□□□ -0.13
SKA3-206ENST00000475251 LRRC2Q9BYS8 371 aa14.25□□□□□ -0.13
SKA3-206ENST00000475251 LSG1Q9H089 658 aaKnown RBP14.25□□□□□ -0.13
SKA3-206ENST00000475251 NRBP2Q9NSY0 501 aa14.25□□□□□ -0.13
SKA3-206ENST00000475251 GABBR1Q9UBS5 961 aa14.25□□□□□ -0.13
SKA3-206ENST00000475251 IRAK3Q9Y616 596 aa14.25□□□□□ -0.13
SKA3-206ENST00000475251 CACNA1HO95180 2353 aa14.24□□□□□ -0.13
SKA3-206ENST00000475251 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.24□□□□□ -0.13
SKA3-206ENST00000475251 WDR64B1ANS9 1081 aa14.24□□□□□ -0.13
SKA3-206ENST00000475251 SKIP12755 728 aa14.24□□□□□ -0.13
SKA3-206ENST00000475251 BCAR1P56945 870 aa14.24□□□□□ -0.13
SKA3-206ENST00000475251 JAKMIP3Q5VZ66 844 aa14.24□□□□□ -0.13
SKA3-206ENST00000475251 ZNF598Q86UK7 904 aaKnown RBP14.24□□□□□ -0.13
SKA3-206ENST00000475251 VPS52Q8N1B4 723 aa14.24□□□□□ -0.13
SKA3-206ENST00000475251 LINC01465Q8N7H1 131 aa14.24□□□□□ -0.13
SKA3-206ENST00000475251 ZBP1Q9H171 429 aa14.24□□□□□ -0.13
SKA3-206ENST00000475251 ADAMTS10Q9H324 1103 aa14.24□□□□□ -0.13
SKA3-206ENST00000475251 CYP26B1Q9NR63 512 aa14.24□□□□□ -0.13
SKA3-206ENST00000475251 CHST12Q9NRB3 414 aa14.24□□□□□ -0.13
SKA3-206ENST00000475251 LIMD1Q9UGP4 676 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms