RNA–Protein interactions for RNA: ENST00000473969.6

USF1-205, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-205ENST00000473969 ZNF668Q96K58 619 aaPredicted RBP15.3■□□□□ 0.04
USF1-205ENST00000473969 NLRP4Q96MN2 994 aa15.3■□□□□ 0.04
USF1-205ENST00000473969 ADAMTS10Q9H324 1103 aa15.3■□□□□ 0.04
USF1-205ENST00000473969 AGO3Q9H9G7 860 aaKnown RBP15.3■□□□□ 0.04
USF1-205ENST00000473969 CDHR5Q9HBB8 845 aa15.3■□□□□ 0.04
USF1-205ENST00000473969 RNF216Q9NWF9 866 aaPredicted RBP15.3■□□□□ 0.04
USF1-205ENST00000473969 NOC2LQ9Y3T9 749 aaKnown RBP15.3■□□□□ 0.04
USF1-205ENST00000473969 COL4A3BPQ9Y5P4 624 aa15.3■□□□□ 0.04
USF1-205ENST00000473969 A0A087WZ62 844 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 DENND3A2RUS2 1198 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 PP2D1A8MPX8 630 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 SLC26A4O43511 780 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 TLL1O43897 1013 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 DARSP14868 501 aaKnown RBP15.29■□□□□ 0.04
USF1-205ENST00000473969 ZSCAN20P17040 1043 aaPredicted RBP15.29■□□□□ 0.04
USF1-205ENST00000473969 EIF4BP23588 611 aaKnown RBP15.29■□□□□ 0.04
USF1-205ENST00000473969 DNAJB2P25686 324 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 MARCKSP29966 332 aaPredicted RBP15.29■□□□□ 0.04
USF1-205ENST00000473969 TXLNAP40222 546 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 MKRN4PQ13434 485 aaPredicted RBP15.29■□□□□ 0.04
USF1-205ENST00000473969 ZNF697Q5TEC3 545 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 HERC6Q8IVU3 1022 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 PRPF31Q8WWY3 499 aaKnown RBP15.29■□□□□ 0.04
USF1-205ENST00000473969 TIFAQ96CG3 184 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 USP28Q96RU2 1077 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 FDXACB1Q9BRP7 624 aaPredicted RBP15.29■□□□□ 0.04
USF1-205ENST00000473969 OSBPL7Q9BZF2 842 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 ST3GAL5Q9UNP4 418 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 PCDHA11Q9Y5I1 949 aa15.29■□□□□ 0.04
USF1-205ENST00000473969 UPP2O95045 317 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 EYA4O95677 639 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 SRGAP2CP0DJJ0 459 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 SFPQP23246 707 aaKnown RBP eCLIP15.28■□□□□ 0.04
USF1-205ENST00000473969 RABGGTBP53611 331 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 DEFB103AP81534 67 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 LAMTOR4Q0VGL1 99 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 SLC39A14Q15043 492 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 ECM1Q16610 540 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 TCTN1Q2MV58 587 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 FOXD4L6Q3SYB3 417 aaPredicted RBP15.28■□□□□ 0.04
USF1-205ENST00000473969 FAM102BQ5T8I3 360 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 ATL3Q6DD88 541 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 FAM109BQ6ICB4 259 aaPredicted RBP15.28■□□□□ 0.04
USF1-205ENST00000473969 FAM117BQ6P1L5 589 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 PADI6Q6TGC4 694 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 FOXD4L3Q6VB84 417 aaPredicted RBP15.28■□□□□ 0.04
USF1-205ENST00000473969 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.28■□□□□ 0.04
USF1-205ENST00000473969 MAEAQ7L5Y9 396 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 TMEM40Q8WWA1 233 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 PBX4Q9BYU1 374 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 BHMT2Q9H2M3 363 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 SLC28A3Q9HAS3 691 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 ERVK-5Q9HDB9 667 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 TFIP11Q9UBB9 837 aaKnown RBP15.28■□□□□ 0.04
USF1-205ENST00000473969 CFAP45Q9UL16 551 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 ATP6V1DQ9Y5K8 247 aa15.28■□□□□ 0.04
USF1-205ENST00000473969 SRPRBQ9Y5M8 271 aaKnown RBP15.28■□□□□ 0.04
USF1-205ENST00000473969 ENPP3O14638 875 aa15.27■□□□□ 0.04
USF1-205ENST00000473969 SSBP05455 408 aaKnown RBP eCLIP15.27■□□□□ 0.04
USF1-205ENST00000473969 STAG3L1P0CL83 205 aa15.27■□□□□ 0.04
USF1-205ENST00000473969 CYP11B2P19099 503 aa15.27■□□□□ 0.04
USF1-205ENST00000473969 PHKA2P46019 1235 aa15.27■□□□□ 0.04
USF1-205ENST00000473969 NCBP1Q09161 790 aaKnown RBP15.27■□□□□ 0.04
USF1-205ENST00000473969 PTPAQ15257 358 aa15.27■□□□□ 0.04
USF1-205ENST00000473969 SRGAP1Q7Z6B7 1085 aa15.27■□□□□ 0.04
USF1-205ENST00000473969 FAM228AQ86W67 206 aa15.27■□□□□ 0.04
USF1-205ENST00000473969 KSR1Q8IVT5 923 aa15.27■□□□□ 0.04
USF1-205ENST00000473969 KRI1Q8N9T8 703 aaKnown RBP15.27■□□□□ 0.04
USF1-205ENST00000473969 RNF149Q8NC42 400 aa15.27■□□□□ 0.04
USF1-205ENST00000473969 PLIN2Q99541 437 aa15.27■□□□□ 0.04
USF1-205ENST00000473969 POLR3FQ9H1D9 316 aaPredicted RBP15.27■□□□□ 0.04
USF1-205ENST00000473969 C1orf112Q9NSG2 853 aa15.27■□□□□ 0.04
USF1-205ENST00000473969 CCDC39Q9UFE4 941 aa15.27■□□□□ 0.04
USF1-205ENST00000473969 LRFN2Q9ULH4 789 aa15.27■□□□□ 0.04
USF1-205ENST00000473969 WDR81Q562E7 1941 aa15.27■□□□□ 0.03
USF1-205ENST00000473969 EVPLQ92817 2033 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 TMEM265A0A087WTH1 108 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 E9PMD0 336 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 SPTLC2O15270 562 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 GJB5O95377 273 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 YEATS4O95619 227 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 IBSPP21815 317 aaPredicted RBP15.26■□□□□ 0.03
USF1-205ENST00000473969 PBX2P40425 430 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 NASPP49321 788 aaPredicted RBP15.26■□□□□ 0.03
USF1-205ENST00000473969 HYIQ5T013 277 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 CATSPER4Q7RTX7 472 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 DEFB123Q8N688 67 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 TOP1MTQ969P6 601 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 IFT74Q96LB3 600 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 YME1L1Q96TA2 773 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 RAD9AQ99638 391 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 ADAM2Q99965 735 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 MMTAG2Q9BU76 263 aaKnown RBP15.26■□□□□ 0.03
USF1-205ENST00000473969 CSRNP2Q9H175 543 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 NKX2-4Q9H2Z4 354 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 XPNPEP1Q9NQW7 623 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 INSL6Q9Y581 213 aa15.26■□□□□ 0.03
USF1-205ENST00000473969 TET1Q8NFU7 2136 aa15.25■□□□□ 0.03
USF1-205ENST00000473969 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.25■□□□□ 0.03
USF1-205ENST00000473969 ARL2P36404 184 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms