RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 RBP3P10745 1247 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 RAC2P15153 192 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 PNLIPP16233 465 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 PTPN1P18031 435 aaKnown RBP7.35□□□□□ -1.23
CKS1B-204ENST00000471245 TUSC3Q13454 348 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 KIR3DS1Q14943 382 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 SEC23AQ15436 765 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 FAM102BQ5T8I3 360 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 FRMD7Q6ZUT3 714 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 NME9Q86XW9 330 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 WDR75Q8IWA0 830 aaKnown RBP7.35□□□□□ -1.23
CKS1B-204ENST00000471245 TCEAL8Q8IYN2 117 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 MYO1HQ8N1T3 1032 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 RHOBTB2Q9BYZ6 727 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 TOPORSQ9NS56 1045 aaPredicted RBP7.35□□□□□ -1.23
CKS1B-204ENST00000471245 RRP7BPQ9NSQ0 103 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 SLC52A1Q9NWF4 448 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 ZNF180Q9UJW8 692 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 TELO2Q9Y4R8 837 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 BRWD3Q6RI45 1802 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 MST1RQ04912 1400 aa7.35□□□□□ -1.23
CKS1B-204ENST00000471245 PIK3R4Q99570 1358 aa7.34□□□□□ -1.23
CKS1B-204ENST00000471245 KDM1AO60341 852 aa7.34□□□□□ -1.23
CKS1B-204ENST00000471245 PSPNO60542 156 aa7.34□□□□□ -1.23
CKS1B-204ENST00000471245 C4BPAP04003 597 aaKnown RBP7.34□□□□□ -1.23
CKS1B-204ENST00000471245 CYBBP04839 570 aa7.34□□□□□ -1.23
CKS1B-204ENST00000471245 DBHP09172 617 aa7.34□□□□□ -1.23
CKS1B-204ENST00000471245 PTX3P26022 381 aaPredicted RBP7.34□□□□□ -1.23
CKS1B-204ENST00000471245 RECQLP46063 649 aaPredicted RBP7.34□□□□□ -1.23
CKS1B-204ENST00000471245 TIGD5Q53EQ6 642 aa7.34□□□□□ -1.23
CKS1B-204ENST00000471245 LMBR1Q8WVP7 490 aa7.34□□□□□ -1.23
CKS1B-204ENST00000471245 LRRC59Q96AG4 307 aaKnown RBP7.34□□□□□ -1.23
CKS1B-204ENST00000471245 SHISA4Q96DD7 197 aa7.34□□□□□ -1.23
CKS1B-204ENST00000471245 PEX11GQ96HA9 241 aa7.34□□□□□ -1.23
CKS1B-204ENST00000471245 C16orf92Q96LL3 132 aa7.34□□□□□ -1.23
CKS1B-204ENST00000471245 ACAP3Q96P50 834 aa7.34□□□□□ -1.23
CKS1B-204ENST00000471245 GPR160Q9UJ42 338 aa7.34□□□□□ -1.23
CKS1B-204ENST00000471245 RPRD2Q5VT52 1461 aaKnown RBP7.34□□□□□ -1.23
CKS1B-204ENST00000471245 PTPRUQ92729 1446 aa7.34□□□□□ -1.23
CKS1B-204ENST00000471245 NRXN3Q9Y4C0 1643 aa7.34□□□□□ -1.24
CKS1B-204ENST00000471245 E9PCH4 1651 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 TCRBV5S2A0A599 114 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 FAM90A27PA6NNH2 459 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 SGSM2O43147 1006 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 SNUPNO95149 360 aaKnown RBP7.33□□□□□ -1.24
CKS1B-204ENST00000471245 ZSCAN20P17040 1043 aaPredicted RBP7.33□□□□□ -1.24
CKS1B-204ENST00000471245 TAL1P17542 331 aaPredicted RBP7.33□□□□□ -1.24
CKS1B-204ENST00000471245 HERVK_113P62684 666 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 ADCY1Q08828 1119 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 TMEM132BQ14DG7 1078 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 CATSPEREQ5SY80 951 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 LCE1DQ5T752 114 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 BTBD8Q5XKL5 378 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 CCSAPQ6IQ19 270 aaPredicted RBP7.33□□□□□ -1.24
CKS1B-204ENST00000471245 PAQR3Q6TCH7 311 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 DDX17Q92841 729 aaKnown RBP7.33□□□□□ -1.24
CKS1B-204ENST00000471245 FAXDC2Q96IV6 333 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 ORAI2Q96SN7 254 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 PALD1Q9ULE6 856 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 LUC7L2Q9Y383 392 aaKnown RBP7.33□□□□□ -1.24
CKS1B-204ENST00000471245 MRFAP1Q9Y605 127 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 COL22A1Q8NFW1 1626 aaPredicted RBP7.33□□□□□ -1.24
CKS1B-204ENST00000471245 DAPK1P53355 1430 aa7.33□□□□□ -1.24
CKS1B-204ENST00000471245 FOXP2O15409 715 aa7.32□□□□□ -1.24
CKS1B-204ENST00000471245 U2AF1L5P0DN76 240 aaPredicted RBP7.32□□□□□ -1.24
CKS1B-204ENST00000471245 CCND1P24385 295 aa7.32□□□□□ -1.24
CKS1B-204ENST00000471245 ERVFC1P60507 584 aa7.32□□□□□ -1.24
CKS1B-204ENST00000471245 ERVFRD-1P60508 538 aa7.32□□□□□ -1.24
CKS1B-204ENST00000471245 U2AF1Q01081 240 aaKnown RBP eCLIP7.32□□□□□ -1.24
CKS1B-204ENST00000471245 HLTFQ14527 1009 aaKnown RBP eCLIP7.32□□□□□ -1.24
CKS1B-204ENST00000471245 CXorf57Q6NSI4 855 aaKnown RBP7.32□□□□□ -1.24
CKS1B-204ENST00000471245 JPH3Q8WXH2 748 aaPredicted RBP7.32□□□□□ -1.24
CKS1B-204ENST00000471245 MYLIPQ8WY64 445 aa7.32□□□□□ -1.24
CKS1B-204ENST00000471245 RIC8BQ9NVN3 520 aa7.32□□□□□ -1.24
CKS1B-204ENST00000471245 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.32□□□□□ -1.24
CKS1B-204ENST00000471245 PRAMEF25A6NGN4 478 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 ATRNO75882 1429 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 ZBTB7AO95365 584 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 PAPLNO95428 1278 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 LTFP02788 710 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 GPR3P46089 330 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 SCAND1P57086 179 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 SLC9A5Q14940 896 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 PCBP2Q15366 365 aaKnown RBP eCLIP7.31□□□□□ -1.24
CKS1B-204ENST00000471245 SPHKAPQ2M3C7 1700 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 MCTP1Q6DN14 999 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 MILR1Q7Z6M3 343 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 PNMA8AQ86V59 439 aaPredicted RBP7.31□□□□□ -1.24
CKS1B-204ENST00000471245 AMOTL1Q8IY63 956 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 CCDC146Q8IYE0 955 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 CPA6Q8N4T0 437 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 MAGEB6Q8N7X4 407 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 CLEC4DQ8WXI8 215 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 SSH1Q8WYL5 1049 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 MS4A5Q9H3V2 200 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 MKS1Q9NXB0 559 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 GABBR1Q9UBS5 961 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 IP6K2Q9UHH9 426 aa7.31□□□□□ -1.24
CKS1B-204ENST00000471245 PNMA8BQ9ULN7 279 aaPredicted RBP7.31□□□□□ -1.24
CKS1B-204ENST00000471245 GIT1Q9Y2X7 761 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms