RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 KLHL23Q8NBE8 558 aa18.33■□□□□ 0.52
COL9A3-208ENST00000469802 SPPL3Q8TCT6 385 aa18.33■□□□□ 0.52
COL9A3-208ENST00000469802 WASF1Q92558 559 aa18.33■□□□□ 0.52
COL9A3-208ENST00000469802 HAS1Q92839 578 aa18.33■□□□□ 0.52
COL9A3-208ENST00000469802 RNF19AQ9NV58 838 aa18.33■□□□□ 0.52
COL9A3-208ENST00000469802 FAM205CA6NFA0 338 aa18.32■□□□□ 0.52
COL9A3-208ENST00000469802 GRXCR2A6NFK2 248 aa18.32■□□□□ 0.52
COL9A3-208ENST00000469802 H3BQ06 376 aaPredicted RBP18.32■□□□□ 0.52
COL9A3-208ENST00000469802 NCK2O43639 380 aa18.32■□□□□ 0.52
COL9A3-208ENST00000469802 IL9P15248 144 aa18.32■□□□□ 0.52
COL9A3-208ENST00000469802 PSMC5P62195 406 aa18.32■□□□□ 0.52
COL9A3-208ENST00000469802 PUS10Q3MIT2 529 aaKnown RBP18.32■□□□□ 0.52
COL9A3-208ENST00000469802 PTCRAQ6ISU1 281 aaPredicted RBP18.32■□□□□ 0.52
COL9A3-208ENST00000469802 FAM178BQ8IXR5 827 aa18.32■□□□□ 0.52
COL9A3-208ENST00000469802 NECAB1Q8N987 351 aa18.32■□□□□ 0.52
COL9A3-208ENST00000469802 NSUN7Q8NE18 718 aaKnown RBP18.32■□□□□ 0.52
COL9A3-208ENST00000469802 CD320Q9NPF0 282 aa18.32■□□□□ 0.52
COL9A3-208ENST00000469802 HCSTQ9UBK5 93 aa18.32■□□□□ 0.52
COL9A3-208ENST00000469802 TBKBP1A7MCY6 615 aa18.31■□□□□ 0.52
COL9A3-208ENST00000469802 CCNT1O60563 726 aaKnown RBP18.31■□□□□ 0.52
COL9A3-208ENST00000469802 EIF5BO60841 1220 aaKnown RBP18.31■□□□□ 0.52
COL9A3-208ENST00000469802 MAFO75444 373 aaPredicted RBP18.31■□□□□ 0.52
COL9A3-208ENST00000469802 FGFR1P11362 822 aa18.31■□□□□ 0.52
COL9A3-208ENST00000469802 SPIRE1Q08AE8 756 aa18.31■□□□□ 0.52
COL9A3-208ENST00000469802 ST3GAL1Q11201 340 aa18.31■□□□□ 0.52
COL9A3-208ENST00000469802 NR5A1Q13285 461 aa18.31■□□□□ 0.52
COL9A3-208ENST00000469802 POTEDQ86YR6 584 aa18.31■□□□□ 0.52
COL9A3-208ENST00000469802 ZNF668Q96K58 619 aaPredicted RBP18.31■□□□□ 0.52
COL9A3-208ENST00000469802 NAP1L4Q99733 375 aaKnown RBP18.31■□□□□ 0.52
COL9A3-208ENST00000469802 SH2D3AQ9BRG2 576 aa18.31■□□□□ 0.52
COL9A3-208ENST00000469802 ATP6V0A4Q9HBG4 840 aa18.31■□□□□ 0.52
COL9A3-208ENST00000469802 CLDND1Q9NY35 253 aa18.31■□□□□ 0.52
COL9A3-208ENST00000469802 WRAP73Q9P2S5 460 aaPredicted RBP18.31■□□□□ 0.52
COL9A3-208ENST00000469802 TBX10O75333 385 aa18.3■□□□□ 0.52
COL9A3-208ENST00000469802 SEC24BO95487 1268 aa18.3■□□□□ 0.52
COL9A3-208ENST00000469802 IBSPP21815 317 aaPredicted RBP18.3■□□□□ 0.52
COL9A3-208ENST00000469802 IRS1P35568 1242 aa18.3■□□□□ 0.52
COL9A3-208ENST00000469802 KRT2P35908 639 aa18.3■□□□□ 0.52
COL9A3-208ENST00000469802 QARSP47897 775 aaKnown RBP18.3■□□□□ 0.52
COL9A3-208ENST00000469802 PLA2G4FQ68DD2 849 aa18.3■□□□□ 0.52
COL9A3-208ENST00000469802 POF1BQ8WVV4 589 aa18.3■□□□□ 0.52
COL9A3-208ENST00000469802 NLRP7Q8WX94 980 aa18.3■□□□□ 0.52
COL9A3-208ENST00000469802 TMEM117Q9H0C3 514 aa18.3■□□□□ 0.52
COL9A3-208ENST00000469802 CWH43Q9H720 699 aa18.3■□□□□ 0.52
COL9A3-208ENST00000469802 C5orf42Q9H799 3197 aa18.3■□□□□ 0.52
COL9A3-208ENST00000469802 HOXA2O43364 376 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 ATF7P17544 494 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-208ENST00000469802 GTF2F1P35269 517 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL9A3-208ENST00000469802 NEK4P51957 841 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 CDC42EP1Q00587 391 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 UBE3AQ05086 875 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 DLX2Q07687 328 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-208ENST00000469802 ADGRD2Q7Z7M1 963 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 ZNF598Q86UK7 904 aaKnown RBP18.29■□□□□ 0.52
COL9A3-208ENST00000469802 ZNF410Q86VK4 478 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 ECHDC2Q86YB7 292 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 COLGALT1Q8NBJ5 622 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 KHSRPQ92945 711 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL9A3-208ENST00000469802 SCLT1Q96NL6 688 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 CASD1Q96PB1 797 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 CYP26B1Q9NR63 512 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 AAASQ9NRG9 546 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 TYW1Q9NV66 732 aaKnown RBP18.29■□□□□ 0.52
COL9A3-208ENST00000469802 PPME1Q9Y570 386 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 PCDHB12Q9Y5F1 795 aa18.29■□□□□ 0.52
COL9A3-208ENST00000469802 A0A0U1RQF3 1178 aa18.28■□□□□ 0.52
COL9A3-208ENST00000469802 DDX11L8A8MPP1 907 aa18.28■□□□□ 0.52
COL9A3-208ENST00000469802 JAK2O60674 1132 aa18.28■□□□□ 0.52
COL9A3-208ENST00000469802 CSPG5O95196 566 aa18.28■□□□□ 0.52
COL9A3-208ENST00000469802 P4HBP07237 508 aaKnown RBP18.28■□□□□ 0.52
COL9A3-208ENST00000469802 ZSCAN20P17040 1043 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-208ENST00000469802 LAG3P18627 525 aa18.28■□□□□ 0.52
COL9A3-208ENST00000469802 FGFR4P22455 802 aa18.28■□□□□ 0.52
COL9A3-208ENST00000469802 CSPP1Q1MSJ5 1256 aa18.28■□□□□ 0.52
COL9A3-208ENST00000469802 LRRC55Q6ZSA7 311 aa18.28■□□□□ 0.52
COL9A3-208ENST00000469802 LRRC43Q8N309 656 aa18.28■□□□□ 0.52
COL9A3-208ENST00000469802 JPH2Q9BR39 696 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-208ENST00000469802 LXNQ9BS40 222 aa18.28■□□□□ 0.52
COL9A3-208ENST00000469802 TRAIPQ9BWF2 469 aa18.28■□□□□ 0.52
COL9A3-208ENST00000469802 C1QTNF1Q9BXJ1 281 aa18.28■□□□□ 0.52
COL9A3-208ENST00000469802 GCOM2Q9BZD3 368 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-208ENST00000469802 BRMS1Q9HCU9 246 aa18.28■□□□□ 0.52
COL9A3-208ENST00000469802 A0A087WZ62 844 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 LINC01565O15544 149 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 DKC1O60832 514 aaKnown RBP eCLIP18.27■□□□□ 0.52
COL9A3-208ENST00000469802 CSDE1O75534 798 aaKnown RBP18.27■□□□□ 0.52
COL9A3-208ENST00000469802 FGF18O76093 207 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 DNM2P50570 870 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 NPEPPSP55786 919 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 ADAM15Q13444 863 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 EPHA7Q15375 998 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 CLLU1OSQ5K130 101 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 C4orf19Q8IY42 314 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 SLFN12Q8IYM2 578 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 EFHBQ8N7U6 833 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 PPP2R3CQ969Q6 453 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 FDXACB1Q9BRP7 624 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-208ENST00000469802 DHX33Q9H6R0 707 aaKnown RBP18.27■□□□□ 0.52
COL9A3-208ENST00000469802 CHST12Q9NRB3 414 aa18.27■□□□□ 0.52
COL9A3-208ENST00000469802 DACT1Q9NYF0 836 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms