RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 XKR3Q5GH77 459 aa18.65■□□□□ 0.58
CCDC28B-204ENST00000469003 SPOUT1Q5T280 376 aaKnown RBP18.65■□□□□ 0.58
CCDC28B-204ENST00000469003 POF1BQ8WVV4 589 aa18.65■□□□□ 0.58
CCDC28B-204ENST00000469003 IGFLR1Q9H665 355 aa18.65■□□□□ 0.58
CCDC28B-204ENST00000469003 SEPT9Q9UHD8 586 aaPredicted RBP18.65■□□□□ 0.58
CCDC28B-204ENST00000469003 PCDHB12Q9Y5F1 795 aa18.65■□□□□ 0.58
CCDC28B-204ENST00000469003 CCDC194A0A1B0GVG4 234 aa18.64■□□□□ 0.57
CCDC28B-204ENST00000469003 SLC37A4O43826 429 aa18.64■□□□□ 0.57
CCDC28B-204ENST00000469003 DARSP14868 501 aaKnown RBP18.64■□□□□ 0.57
CCDC28B-204ENST00000469003 ZSCAN20P17040 1043 aaPredicted RBP18.64■□□□□ 0.57
CCDC28B-204ENST00000469003 GTF2F1P35269 517 aaKnown RBP eCLIP18.64■□□□□ 0.57
CCDC28B-204ENST00000469003 LETM2Q2VYF4 491 aa18.64■□□□□ 0.57
CCDC28B-204ENST00000469003 MTERF2Q49AM1 385 aa18.64■□□□□ 0.57
CCDC28B-204ENST00000469003 ALYREFQ86V81 257 aaKnown RBP18.64■□□□□ 0.57
CCDC28B-204ENST00000469003 CEP89Q96ST8 783 aa18.64■□□□□ 0.57
CCDC28B-204ENST00000469003 TYW1Q9NV66 732 aaKnown RBP18.64■□□□□ 0.57
CCDC28B-204ENST00000469003 PRKAG3Q9UGI9 489 aa18.64■□□□□ 0.57
CCDC28B-204ENST00000469003 IGKV6-21A0A0C4DH24 114 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 PI4K2BG5E9Z4 385 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 HOXA2O43364 376 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 TBX10O75333 385 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 FGFR1P11362 822 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 SSTR3P32745 418 aaPredicted RBP18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 IRS1P35568 1242 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 CDC42EP1Q00587 391 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 UBE3AQ05086 875 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 DLX2Q07687 328 aaPredicted RBP18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 ADAM15Q13444 863 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 ANKRD1Q15327 319 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 CSPP1Q1MSJ5 1256 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 ADGRD2Q7Z7M1 963 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 NEK8Q86SG6 692 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 COLGALT1Q8NBJ5 622 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 ZNF668Q96K58 619 aaPredicted RBP18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 FAM20AQ96MK3 541 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 SCLT1Q96NL6 688 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 TMEM117Q9H0C3 514 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 CWH43Q9H720 699 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 KCNMB3Q9NPA1 279 aa18.63■□□□□ 0.57
CCDC28B-204ENST00000469003 TMEM150BA6NC51 233 aa18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 LINC01565O15544 149 aa18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 GCFC2P16383 781 aaKnown RBP18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 LAG3P18627 525 aa18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 DNM2P50570 870 aa18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 PSMC5P62195 406 aa18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 PPP2R5CQ13362 524 aa18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 DRP2Q13474 957 aa18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 ERICH6BQ5W0A0 696 aa18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 PPP4R3AQ6IN85 833 aa18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 ECHDC2Q86YB7 292 aa18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 NLRP7Q8WX94 980 aa18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 RNF19AQ9NV58 838 aa18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 HCSTQ9UBK5 93 aa18.62■□□□□ 0.57
CCDC28B-204ENST00000469003 DDX11L8A8MPP1 907 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 EML1O00423 815 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 MBTPS2O43462 519 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 FGF18O76093 207 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 CTDNEP1O95476 244 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 AK2P54819 239 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 ZP2Q05996 745 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 SMAD4Q13485 552 aaKnown RBP18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 SMAD2Q15796 467 aaKnown RBP18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 CLUL1Q15846 466 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 ADHFE1Q8IWW8 467 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 THNSL1Q8IYQ7 743 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 EFHBQ8N7U6 833 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 WASF1Q92558 559 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 CASD1Q96PB1 797 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 NAP1L4Q99733 375 aaKnown RBP18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 GCOM2Q9BZD3 368 aaPredicted RBP18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 GJB4Q9NTQ9 266 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 ORC3Q9UBD5 711 aaPredicted RBP18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 CD207Q9UJ71 328 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 VAV3Q9UKW4 847 aa18.61■□□□□ 0.57
CCDC28B-204ENST00000469003 C19orf67A6NJJ6 358 aa18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 TBX3O15119 743 aa18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 MAFO75444 373 aaPredicted RBP18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 FGFR4P22455 802 aa18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 NDUFV1P49821 464 aa18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 PIK3AP1Q6ZUJ8 805 aa18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 ANO5Q75V66 913 aa18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 ABI1Q8IZP0 508 aa18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 OXER1Q8TDS5 423 aa18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 MSLNLQ96KJ4 702 aa18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 JPH2Q9BR39 696 aaPredicted RBP18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 SH2D3AQ9BRG2 576 aa18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 TLR9Q9NR96 1032 aa18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 DACT1Q9NYF0 836 aa18.6■□□□□ 0.57
CCDC28B-204ENST00000469003 A0A0U1RQF3 1178 aa18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 PRR33A8MZF0 331 aa18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 CCNT1O60563 726 aaKnown RBP18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 DKC1O60832 514 aaKnown RBP eCLIP18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 DTNBO60941 627 aa18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 EOMESO95936 686 aa18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 P4HBP07237 508 aaKnown RBP18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 QARSP47897 775 aaKnown RBP18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 NRIP1P48552 1158 aa18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 PDE12Q6L8Q7 609 aaKnown RBP18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 LRRC55Q6ZSA7 311 aa18.59■□□□□ 0.57
CCDC28B-204ENST00000469003 ZNF598Q86UK7 904 aaKnown RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms