RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 ATP6V0A4Q9HBG4 840 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 POLD4Q9HCU8 107 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 PADI3Q9ULW8 664 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 PTPRSQ13332 1948 aa13.41□□□□□ -0.26
SHROOM3-202ENST00000466541 A0A087WZ62 844 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 IGKV6-21A0A0C4DH24 114 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 ABHD14A-ACY1A0A1B0GW23 586 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 E9PMD0 336 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 UBA7P41226 1012 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 GPC3P51654 580 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 PTPAQ15257 358 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 FAM102BQ5T8I3 360 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 Q7L0L9 218 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 CABP7Q86V35 215 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 EXOC8Q8IYI6 725 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 PRPF31Q8WWY3 499 aaKnown RBP13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 PSPC1Q8WXF1 523 aaKnown RBP13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 APBB2Q92870 758 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 CLIC6Q96NY7 704 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 FDXACB1Q9BRP7 624 aaPredicted RBP13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 MMTAG2Q9BU76 263 aaKnown RBP13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 BHMT2Q9H2M3 363 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 ADAMTS10Q9H324 1103 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 DHX33Q9H6R0 707 aaKnown RBP13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 MSRAQ9UJ68 235 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 DNM3Q9UQ16 869 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 COL4A3BPQ9Y5P4 624 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 STK24Q9Y6E0 443 aa13.4□□□□□ -0.26
SHROOM3-202ENST00000466541 SZT2Q5T011 3432 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 DGAT1O75907 488 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 AMHP03971 560 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 XRCC6P12956 609 aaKnown RBP eCLIP13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 NCLP19338 710 aaKnown RBP13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 EIF4BP23588 611 aaKnown RBP13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 LAMTOR4Q0VGL1 99 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 DHX8Q14562 1220 aaKnown RBP13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 TPRNQ4KMQ1 711 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 PADI6Q6TGC4 694 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 TCP11Q8WWU5 503 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 SLC9A7Q96T83 725 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 PBX4Q9BYU1 374 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 GCOM2Q9BZD3 368 aaPredicted RBP13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 CSRNP2Q9H175 543 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 POLR3FQ9H1D9 316 aaPredicted RBP13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 GPRC5CQ9NQ84 441 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 XPNPEP1Q9NQW7 623 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 DBR1Q9UK59 544 aaKnown RBP13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 ST3GAL5Q9UNP4 418 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 PPME1Q9Y570 386 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 KDM3AQ9Y4C1 1321 aa13.39□□□□□ -0.27
SHROOM3-202ENST00000466541 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 DENND3A2RUS2 1198 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 GPR182O15218 404 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 EFCAB14O75071 495 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 PDIA4P13667 645 aaKnown RBP13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 DNAJB2P25686 324 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 SMAD3P84022 425 aaKnown RBP13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 RAD51AP2Q09MP3 1159 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 KARSQ15046 597 aaKnown RBP13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 KCNK18Q7Z418 384 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 FAM228AQ86W67 206 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 HERC6Q8IVU3 1022 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 USP38Q8NB14 1042 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 RNF149Q8NC42 400 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 ASAP3Q8TDY4 903 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 CALML4Q96GE6 196 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 EPSTI1Q96J88 318 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 PNMA5Q96PV4 448 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 PANK2Q9BZ23 570 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 NKX2-4Q9H2Z4 354 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 TMX1Q9H3N1 280 aa13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 FBXO2Q9UK22 296 aaPredicted RBP13.38□□□□□ -0.27
SHROOM3-202ENST00000466541 ENPP3O14638 875 aa13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 SPTLC2O15270 562 aa13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 TLL1O43897 1013 aa13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 MGEA5O60502 916 aa13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 DARSP14868 501 aaKnown RBP13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 LONP1P36776 959 aaKnown RBP13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 DNM1Q05193 864 aaKnown RBP13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 GRB10Q13322 594 aa13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 SLC39A14Q15043 492 aa13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 USP49Q70CQ1 688 aa13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 KRI1Q8N9T8 703 aaKnown RBP13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 TIFAQ96CG3 184 aa13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 CHAMP1Q96JM3 812 aa13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 ADAM2Q99965 735 aa13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 ERVK-5Q9HDB9 667 aa13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 YBX2Q9Y2T7 364 aaKnown RBP13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 ZDHHC9Q9Y397 364 aa13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 SRPRBQ9Y5M8 271 aaKnown RBP13.37□□□□□ -0.27
SHROOM3-202ENST00000466541 LRRIQ4A6NIV6 560 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 GAS2O43903 313 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 EYA4O95677 639 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 BRD1O95696 1058 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 LIG1P18858 919 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 MUTP22033 750 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 CDC42EP1Q00587 391 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 TFDP1Q14186 410 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 RAB30Q15771 203 aa13.36□□□□□ -0.27
SHROOM3-202ENST00000466541 ODR4Q5SWX8 454 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms