RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 UBE3AQ05086 875 aa21.58■■□□□ 1.05
COL9A3-206ENST00000466532 NPY5RQ15761 445 aa21.58■■□□□ 1.05
COL9A3-206ENST00000466532 GALNT17Q6IS24 598 aa21.58■■□□□ 1.05
COL9A3-206ENST00000466532 RBM23Q86U06 439 aaKnown RBP21.58■■□□□ 1.05
COL9A3-206ENST00000466532 EFHBQ8N7U6 833 aa21.58■■□□□ 1.05
COL9A3-206ENST00000466532 COLGALT1Q8NBJ5 622 aa21.58■■□□□ 1.05
COL9A3-206ENST00000466532 SEPT9Q9UHD8 586 aaPredicted RBP21.58■■□□□ 1.05
COL9A3-206ENST00000466532 C19orf67A6NJJ6 358 aa21.57■■□□□ 1.04
COL9A3-206ENST00000466532 FGF18O76093 207 aa21.57■■□□□ 1.04
COL9A3-206ENST00000466532 PLA2G5P39877 138 aa21.57■■□□□ 1.04
COL9A3-206ENST00000466532 GPC3P51654 580 aa21.57■■□□□ 1.04
COL9A3-206ENST00000466532 NONOQ15233 471 aaKnown RBP eCLIP21.57■■□□□ 1.04
COL9A3-206ENST00000466532 CSPP1Q1MSJ5 1256 aa21.57■■□□□ 1.04
COL9A3-206ENST00000466532 MTERF2Q49AM1 385 aa21.57■■□□□ 1.04
COL9A3-206ENST00000466532 MOXD1Q6UVY6 613 aa21.57■■□□□ 1.04
COL9A3-206ENST00000466532 THNSL1Q8IYQ7 743 aa21.57■■□□□ 1.04
COL9A3-206ENST00000466532 FAM177A1Q8N128 213 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-206ENST00000466532 MICAL1Q8TDZ2 1067 aa21.57■■□□□ 1.04
COL9A3-206ENST00000466532 FAM122AQ96E09 287 aa21.57■■□□□ 1.04
COL9A3-206ENST00000466532 TMEM117Q9H0C3 514 aa21.57■■□□□ 1.04
COL9A3-206ENST00000466532 CWH43Q9H720 699 aa21.57■■□□□ 1.04
COL9A3-206ENST00000466532 TLR9Q9NR96 1032 aa21.57■■□□□ 1.04
COL9A3-206ENST00000466532 HOXA2O43364 376 aa21.56■■□□□ 1.04
COL9A3-206ENST00000466532 DARSP14868 501 aaKnown RBP21.56■■□□□ 1.04
COL9A3-206ENST00000466532 LAG3P18627 525 aa21.56■■□□□ 1.04
COL9A3-206ENST00000466532 TARBP2Q15633 366 aaKnown RBP21.56■■□□□ 1.04
COL9A3-206ENST00000466532 XKR3Q5GH77 459 aa21.56■■□□□ 1.04
COL9A3-206ENST00000466532 B3GNT9Q6UX72 402 aa21.56■■□□□ 1.04
COL9A3-206ENST00000466532 NLRP7Q8WX94 980 aa21.56■■□□□ 1.04
COL9A3-206ENST00000466532 MSLNLQ96KJ4 702 aa21.56■■□□□ 1.04
COL9A3-206ENST00000466532 MBOAT7Q96N66 472 aa21.56■■□□□ 1.04
COL9A3-206ENST00000466532 POP1Q99575 1024 aaKnown RBP21.56■■□□□ 1.04
COL9A3-206ENST00000466532 NIFKQ9BYG3 293 aaKnown RBP21.56■■□□□ 1.04
COL9A3-206ENST00000466532 KCNJ14Q9UNX9 436 aa21.56■■□□□ 1.04
COL9A3-206ENST00000466532 TMEM150BA6NC51 233 aa21.55■■□□□ 1.04
COL9A3-206ENST00000466532 DCXO43602 365 aa21.55■■□□□ 1.04
COL9A3-206ENST00000466532 DRP2Q13474 957 aa21.55■■□□□ 1.04
COL9A3-206ENST00000466532 INF2Q27J81 1249 aa21.55■■□□□ 1.04
COL9A3-206ENST00000466532 KRT25Q7Z3Z0 450 aa21.55■■□□□ 1.04
COL9A3-206ENST00000466532 ECHDC2Q86YB7 292 aa21.55■■□□□ 1.04
COL9A3-206ENST00000466532 ABI1Q8IZP0 508 aa21.55■■□□□ 1.04
COL9A3-206ENST00000466532 ETNPPLQ8TBG4 499 aa21.55■■□□□ 1.04
COL9A3-206ENST00000466532 CASD1Q96PB1 797 aa21.55■■□□□ 1.04
COL9A3-206ENST00000466532 TLE6Q9H808 572 aa21.55■■□□□ 1.04
COL9A3-206ENST00000466532 RNF19AQ9NV58 838 aa21.55■■□□□ 1.04
COL9A3-206ENST00000466532 CLEC1BQ9P126 229 aa21.55■■□□□ 1.04
COL9A3-206ENST00000466532 DDX25Q9UHL0 483 aaKnown RBP21.55■■□□□ 1.04
COL9A3-206ENST00000466532 PRR33A8MZF0 331 aa21.54■■□□□ 1.04
COL9A3-206ENST00000466532 CDKL5O76039 1030 aa21.54■■□□□ 1.04
COL9A3-206ENST00000466532 STBD1O95210 358 aa21.54■■□□□ 1.04
COL9A3-206ENST00000466532 GLP2RO95838 553 aa21.54■■□□□ 1.04
COL9A3-206ENST00000466532 FGFR4P22455 802 aa21.54■■□□□ 1.04
COL9A3-206ENST00000466532 ERVFC1P60507 584 aa21.54■■□□□ 1.04
COL9A3-206ENST00000466532 SCRN1Q12765 414 aa21.54■■□□□ 1.04
COL9A3-206ENST00000466532 LRRC55Q6ZSA7 311 aa21.54■■□□□ 1.04
COL9A3-206ENST00000466532 RNF169Q8NCN4 708 aa21.54■■□□□ 1.04
COL9A3-206ENST00000466532 SH2D3AQ9BRG2 576 aa21.54■■□□□ 1.04
COL9A3-206ENST00000466532 BARX2Q9UMQ3 279 aaPredicted RBP21.54■■□□□ 1.04
COL9A3-206ENST00000466532 CCDC194A0A1B0GVG4 234 aa21.53■■□□□ 1.04
COL9A3-206ENST00000466532 PER2O15055 1255 aa21.53■■□□□ 1.04
COL9A3-206ENST00000466532 SLC37A4O43826 429 aa21.53■■□□□ 1.04
COL9A3-206ENST00000466532 EYA4O95677 639 aa21.53■■□□□ 1.04
COL9A3-206ENST00000466532 COASYQ13057 564 aa21.53■■□□□ 1.04
COL9A3-206ENST00000466532 LETM2Q2VYF4 491 aa21.53■■□□□ 1.04
COL9A3-206ENST00000466532 LRRC43Q8N309 656 aa21.53■■□□□ 1.04
COL9A3-206ENST00000466532 CEP89Q96ST8 783 aa21.53■■□□□ 1.04
COL9A3-206ENST00000466532 PHF20Q9BVI0 1012 aa21.53■■□□□ 1.04
COL9A3-206ENST00000466532 GCOM2Q9BZD3 368 aaPredicted RBP21.53■■□□□ 1.04
COL9A3-206ENST00000466532 SLKQ9H2G2 1235 aaPredicted RBP21.53■■□□□ 1.04
COL9A3-206ENST00000466532 ARIH1Q9Y4X5 557 aaPredicted RBP21.53■■□□□ 1.04
COL9A3-206ENST00000466532 DDX11L8A8MPP1 907 aa21.52■■□□□ 1.04
COL9A3-206ENST00000466532 CSDE1O75534 798 aaKnown RBP21.52■■□□□ 1.04
COL9A3-206ENST00000466532 NEFLP07196 543 aa21.52■■□□□ 1.04
COL9A3-206ENST00000466532 DNM2P50570 870 aa21.52■■□□□ 1.04
COL9A3-206ENST00000466532 CDC42EP1Q00587 391 aa21.52■■□□□ 1.04
COL9A3-206ENST00000466532 PLCB3Q01970 1234 aa21.52■■□□□ 1.04
COL9A3-206ENST00000466532 DUSP6Q16828 381 aa21.52■■□□□ 1.04
COL9A3-206ENST00000466532 PDE12Q6L8Q7 609 aaKnown RBP21.52■■□□□ 1.04
COL9A3-206ENST00000466532 SMRP1Q8NCR6 262 aa21.52■■□□□ 1.04
COL9A3-206ENST00000466532 MRPS27Q92552 414 aaKnown RBP21.52■■□□□ 1.04
COL9A3-206ENST00000466532 DACT1Q9NYF0 836 aa21.52■■□□□ 1.04
COL9A3-206ENST00000466532 STK36Q9NRP7 1315 aa21.52■■□□□ 1.03
COL9A3-206ENST00000466532 A0A087WZ62 844 aa21.51■■□□□ 1.03
COL9A3-206ENST00000466532 IGKV6-21A0A0C4DH24 114 aa21.51■■□□□ 1.03
COL9A3-206ENST00000466532 A0A0U1RQF3 1178 aa21.51■■□□□ 1.03
COL9A3-206ENST00000466532 FSCN2O14926 492 aa21.51■■□□□ 1.03
COL9A3-206ENST00000466532 XBP1P17861 261 aa21.51■■□□□ 1.03
COL9A3-206ENST00000466532 PSMC5P62195 406 aa21.51■■□□□ 1.03
COL9A3-206ENST00000466532 CLLU1OSQ5K130 101 aa21.51■■□□□ 1.03
COL9A3-206ENST00000466532 PLPP4Q5VZY2 271 aa21.51■■□□□ 1.03
COL9A3-206ENST00000466532 KCNT2Q6UVM3 1135 aa21.51■■□□□ 1.03
COL9A3-206ENST00000466532 NEK8Q86SG6 692 aa21.51■■□□□ 1.03
COL9A3-206ENST00000466532 HELQQ8TDG4 1101 aa21.51■■□□□ 1.03
COL9A3-206ENST00000466532 ZNF558Q96NG5 402 aa21.51■■□□□ 1.03
COL9A3-206ENST00000466532 CDCA3Q99618 268 aaPredicted RBP21.51■■□□□ 1.03
COL9A3-206ENST00000466532 FDXACB1Q9BRP7 624 aaPredicted RBP21.51■■□□□ 1.03
COL9A3-206ENST00000466532 PUF60Q9UHX1 559 aaKnown RBP21.51■■□□□ 1.03
COL9A3-206ENST00000466532 LZTS1Q9Y250 596 aa21.51■■□□□ 1.03
COL9A3-206ENST00000466532 FSD2A1L4K1 749 aa21.5■■□□□ 1.03
COL9A3-206ENST00000466532 EML1O00423 815 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms