RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 NCOR2Q9Y618 2525 aa13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 CYP3A4P08684 503 aa13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 HOXB8P17481 243 aaPredicted RBP13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 TCF7P36402 384 aaPredicted RBP13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 TECP42680 631 aa13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 SP4Q02446 784 aa13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 UTP14CQ5TAP6 766 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 PDE12Q6L8Q7 609 aaKnown RBP13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 KRT25Q7Z3Z0 450 aa13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 CCDC105Q8IYK2 499 aa13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 FBXO18Q8NFZ0 1043 aa13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 OXER1Q8TDS5 423 aa13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 SMOC2Q9H3U7 446 aa13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 TSHZ2Q9NRE2 1034 aa13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 WDR81Q562E7 1941 aa13.45□□□□□ -0.26
SQSTM1-206ENST00000466342 NRCAMQ92823 1304 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 ZFHX4Q86UP3 3567 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 CCDC194A0A1B0GVG4 234 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 GSTTP1A0A1W2PQM5 241 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 C2CD4DB7Z1M9 353 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 PI15O43692 258 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 STAG3L1P0CL83 205 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 AOC1P19801 751 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 ERVFC1P60507 584 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 GUCY1B3Q02153 619 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 NONOQ15233 471 aaKnown RBP eCLIP13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 PAN2Q504Q3 1202 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 CEP55Q53EZ4 464 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 RTN4RL1Q86UN2 441 aaPredicted RBP13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 NPAS4Q8IUM7 802 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 DIS3L2Q8IYB7 885 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 FLCNQ8NFG4 579 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 TBCKQ8TEA7 893 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 TNFRSF25Q93038 417 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 INTS4Q96HW7 963 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 APOL5Q9BWW9 433 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 SMARCAD1Q9H4L7 1026 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 KCNH7Q9NS40 1196 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 ERAP1Q9NZ08 941 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 TELO2Q9Y4R8 837 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 PCDHB12Q9Y5F1 795 aa13.44□□□□□ -0.26
SQSTM1-206ENST00000466342 NFASCO94856 1347 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 CFAP47Q6ZTR5 3102 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 BTBD18B2RXH4 712 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 FAM86B1E9PN63 330 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 MEIS1O00470 390 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 FAM86B2P0C5J1 330 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 CIITAP33076 1130 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 ZNF76P36508 570 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 USP11P51784 963 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 MGAT3Q09327 533 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 NR5A1Q13285 461 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 SAFBQ15424 915 aaKnown RBP eCLIP13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 FBXO47Q5MNV8 452 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 CWF19L1Q69YN2 538 aaKnown RBP13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 NIPA1Q7RTP0 329 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 TRIM50Q86XT4 487 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 DTWD2Q8NBA8 298 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 LMBR1Q8WVP7 490 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 RTP3Q9BQQ7 232 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 SLC9A2Q9UBY0 812 aa13.43□□□□□ -0.26
SQSTM1-206ENST00000466342 ACACBO00763 2458 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 IGLV3-22A0A075B6J6 115 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 EDIL3O43854 480 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 ASGR2P07307 311 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 ARP10275 920 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 INF2Q27J81 1249 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 TAF2Q6P1X5 1199 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 TSHZ1Q6ZSZ6 1077 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 PIK3AP1Q6ZUJ8 805 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 RSPH3Q86UC2 560 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 CYP2W1Q8TAV3 490 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 LINC01599Q8WXQ3 324 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 GLG1Q92896 1179 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 TNPO1Q92973 898 aaKnown RBP13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 NECTIN4Q96NY8 510 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 SDF4Q9BRK5 362 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 FTHL17Q9BXU8 183 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 POMKQ9H5K3 350 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 JPH1Q9HDC5 661 aaPredicted RBP13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 AAASQ9NRG9 546 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 PKD2L1Q9P0L9 805 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 MYH15Q9Y2K3 1946 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 CEP250Q9BV73 2442 aa13.42□□□□□ -0.26
SQSTM1-206ENST00000466342 BAHCC1Q9P281 2608 aa13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 FSCN2O14926 492 aa13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 FGF18O76093 207 aa13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 NPR3P17342 541 aa13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 SETQ01105 290 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 TPRNQ4KMQ1 711 aa13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 EARS2Q5JPH6 523 aaKnown RBP13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 CES5AQ6NT32 575 aa13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 MOXD1Q6UVY6 613 aa13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 NEK8Q86SG6 692 aa13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 PLA2G4DQ86XP0 818 aa13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 ZDHHC14Q8IZN3 488 aa13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 PLCD3Q8N3E9 789 aa13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 FOXP1Q9H334 677 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 AGO4Q9HCK5 861 aaKnown RBP13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 LIMD1Q9UGP4 676 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms