RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 METAP2P50579 478 aaKnown RBP eCLIP16.44■□□□□ 0.22
CXCR4-203ENST00000466288 BCAR1P56945 870 aa16.44■□□□□ 0.22
CXCR4-203ENST00000466288 TDGQ13569 410 aa16.44■□□□□ 0.22
CXCR4-203ENST00000466288 HEATR3Q7Z4Q2 680 aa16.44■□□□□ 0.22
CXCR4-203ENST00000466288 ZNF598Q86UK7 904 aaKnown RBP16.44■□□□□ 0.22
CXCR4-203ENST00000466288 METTL13Q8N6R0 699 aa16.44■□□□□ 0.22
CXCR4-203ENST00000466288 SLC22A17Q8WUG5 538 aa16.44■□□□□ 0.22
CXCR4-203ENST00000466288 RTP3Q9BQQ7 232 aa16.44■□□□□ 0.22
CXCR4-203ENST00000466288 ZBP1Q9H171 429 aa16.44■□□□□ 0.22
CXCR4-203ENST00000466288 DUSP12Q9UNI6 340 aa16.44■□□□□ 0.22
CXCR4-203ENST00000466288 IRAK3Q9Y616 596 aa16.44■□□□□ 0.22
CXCR4-203ENST00000466288 EP300Q09472 2414 aaPredicted RBP16.44■□□□□ 0.22
CXCR4-203ENST00000466288 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.43■□□□□ 0.22
CXCR4-203ENST00000466288 DHX15O43143 795 aaKnown RBP16.43■□□□□ 0.22
CXCR4-203ENST00000466288 CA8P35219 290 aa16.43■□□□□ 0.22
CXCR4-203ENST00000466288 TYW1BQ6NUM6 668 aa16.43■□□□□ 0.22
CXCR4-203ENST00000466288 SWSAP1Q6NVH7 229 aa16.43■□□□□ 0.22
CXCR4-203ENST00000466288 TMC5Q6UXY8 1006 aa16.43■□□□□ 0.22
CXCR4-203ENST00000466288 TMEM173Q86WV6 379 aaPredicted RBP16.43■□□□□ 0.22
CXCR4-203ENST00000466288 VPS52Q8N1B4 723 aa16.43■□□□□ 0.22
CXCR4-203ENST00000466288 CCDC82Q8N4S0 544 aa16.43■□□□□ 0.22
CXCR4-203ENST00000466288 RNF169Q8NCN4 708 aa16.43■□□□□ 0.22
CXCR4-203ENST00000466288 AUTS2Q8WXX7 1259 aa16.43■□□□□ 0.22
CXCR4-203ENST00000466288 MTA3Q9BTC8 594 aa16.43■□□□□ 0.22
CXCR4-203ENST00000466288 RNF39Q9H2S5 420 aa16.43■□□□□ 0.22
CXCR4-203ENST00000466288 ADAMTS10Q9H324 1103 aa16.43■□□□□ 0.22
CXCR4-203ENST00000466288 MAFBQ9Y5Q3 323 aaPredicted RBP16.43■□□□□ 0.22
CXCR4-203ENST00000466288 A0A0U1RQF3 1178 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 SH2B2O14492 632 aaPredicted RBP16.42■□□□□ 0.22
CXCR4-203ENST00000466288 GSPT1P15170 499 aaKnown RBP16.42■□□□□ 0.22
CXCR4-203ENST00000466288 ALDH7A1P49419 539 aaKnown RBP16.42■□□□□ 0.22
CXCR4-203ENST00000466288 CLCN3P51790 818 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 NLRP11P59045 1033 aaKnown RBP16.42■□□□□ 0.22
CXCR4-203ENST00000466288 BMS1Q14692 1282 aaKnown RBP16.42■□□□□ 0.22
CXCR4-203ENST00000466288 SIX5Q8N196 739 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 TMTC2Q8N394 836 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 LINC01465Q8N7H1 131 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 HELQQ8TDG4 1101 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 BBXQ8WY36 941 aaPredicted RBP16.42■□□□□ 0.22
CXCR4-203ENST00000466288 ACSF2Q96CM8 615 aaPredicted RBP16.42■□□□□ 0.22
CXCR4-203ENST00000466288 TMEM169Q96HH4 297 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 ANO3Q9BYT9 981 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 SEMA4AQ9H3S1 761 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 KCNK12Q9HB15 430 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 PRC1O43663 620 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 FOSP01100 380 aaPredicted RBP16.42■□□□□ 0.22
CXCR4-203ENST00000466288 LMNAP02545 664 aaKnown RBP16.42■□□□□ 0.22
CXCR4-203ENST00000466288 CTSAP10619 480 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 EIF4BP23588 611 aaKnown RBP16.42■□□□□ 0.22
CXCR4-203ENST00000466288 SREBF1P36956 1147 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 COL9A3Q14050 684 aaPredicted RBP16.42■□□□□ 0.22
CXCR4-203ENST00000466288 WWC2Q6AWC2 1192 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 MIS18BP1Q6P0N0 1132 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 CASC1Q6TDU7 716 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 NFXL1Q6ZNB6 911 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 TMTC3Q6ZXV5 915 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 NIPA1Q7RTP0 329 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 OTOP3Q7RTS5 596 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 DGLUCYQ7Z3D6 616 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 GPR149Q86SP6 731 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 CABP7Q86V35 215 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 RAB11FIP4Q86YS3 637 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 RIC8AQ9NPQ8 531 aa16.42■□□□□ 0.22
CXCR4-203ENST00000466288 CCDC69A6NI79 296 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 FAM86B1E9PN63 330 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 FAM86B2P0C5J1 330 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 CALM1P0DP23 149 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 CALM2P0DP24 149 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 CALM3P0DP25 149 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 POLGP54098 1239 aaPredicted RBP16.41■□□□□ 0.22
CXCR4-203ENST00000466288 AAMPQ13685 434 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 GIT2Q14161 759 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 CCDC149Q6ZUS6 474 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 TEX2Q8IWB9 1127 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 CKAP2LQ8IYA6 745 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 TMEM87AQ8NBN3 555 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 KCNG4Q8TDN1 519 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 RUFY2Q8WXA3 655 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 MAP4K1Q92918 833 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 MRPL9Q9BYD2 267 aaKnown RBP16.41■□□□□ 0.22
CXCR4-203ENST00000466288 FBXL21Q9UKT6 434 aa16.41■□□□□ 0.22
CXCR4-203ENST00000466288 MAGEB2O15479 319 aa16.4■□□□□ 0.22
CXCR4-203ENST00000466288 CHMLP26374 656 aa16.4■□□□□ 0.22
CXCR4-203ENST00000466288 LIFRP42702 1097 aa16.4■□□□□ 0.22
CXCR4-203ENST00000466288 EFCAB12Q6NXP0 572 aa16.4■□□□□ 0.22
CXCR4-203ENST00000466288 TRMT1LQ7Z2T5 733 aaKnown RBP16.4■□□□□ 0.22
CXCR4-203ENST00000466288 DDX53Q86TM3 631 aaKnown RBP16.4■□□□□ 0.22
CXCR4-203ENST00000466288 KIAA2013Q8IYS2 634 aa16.4■□□□□ 0.22
CXCR4-203ENST00000466288 FANCBQ8NB91 859 aa16.4■□□□□ 0.22
CXCR4-203ENST00000466288 BCL7CQ8WUZ0 217 aaPredicted RBP16.4■□□□□ 0.22
CXCR4-203ENST00000466288 TMEM87BQ96K49 555 aa16.4■□□□□ 0.22
CXCR4-203ENST00000466288 ZNF668Q96K58 619 aaPredicted RBP16.4■□□□□ 0.22
CXCR4-203ENST00000466288 SFXN1Q9H9B4 322 aa16.4■□□□□ 0.22
CXCR4-203ENST00000466288 CEP131Q9UPN4 1083 aa16.4■□□□□ 0.22
CXCR4-203ENST00000466288 AKT3Q9Y243 479 aa16.4■□□□□ 0.22
CXCR4-203ENST00000466288 IGLV3-22A0A075B6J6 115 aa16.39■□□□□ 0.21
CXCR4-203ENST00000466288 NARSO43776 548 aaKnown RBP16.39■□□□□ 0.21
CXCR4-203ENST00000466288 FGFR4P22455 802 aa16.39■□□□□ 0.21
CXCR4-203ENST00000466288 ZNF76P36508 570 aa16.39■□□□□ 0.21
CXCR4-203ENST00000466288 ZNF710Q8N1W2 664 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms