RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 MRPL38Q96DV4 380 aaKnown RBP24.42■■□□□ 1.5
LIME1-203ENST00000465591 TMEM60Q9H2L4 133 aa24.42■■□□□ 1.5
LIME1-203ENST00000465591 CYP26B1Q9NR63 512 aa24.42■■□□□ 1.5
LIME1-203ENST00000465591 SH2B1Q9NRF2 756 aaPredicted RBP24.42■■□□□ 1.5
LIME1-203ENST00000465591 BAG4O95429 457 aaKnown RBP24.41■■□□□ 1.5
LIME1-203ENST00000465591 CYP4A11Q02928 519 aa24.41■■□□□ 1.5
LIME1-203ENST00000465591 CTTNQ14247 550 aaKnown RBP24.41■■□□□ 1.5
LIME1-203ENST00000465591 ODR4Q5SWX8 454 aa24.41■■□□□ 1.5
LIME1-203ENST00000465591 SLC24A5Q71RS6 500 aa24.41■■□□□ 1.5
LIME1-203ENST00000465591 MTMR9Q96QG7 549 aa24.41■■□□□ 1.5
LIME1-203ENST00000465591 C1orf112Q9NSG2 853 aa24.41■■□□□ 1.5
LIME1-203ENST00000465591 NEMFO60524 1076 aa24.4■■□□□ 1.5
LIME1-203ENST00000465591 ATP2B1P20020 1258 aa24.4■■□□□ 1.5
LIME1-203ENST00000465591 FAM189BP81408 668 aa24.4■■□□□ 1.5
LIME1-203ENST00000465591 RABEP1Q15276 862 aa24.4■■□□□ 1.5
LIME1-203ENST00000465591 FAM102BQ5T8I3 360 aa24.4■■□□□ 1.5
LIME1-203ENST00000465591 KSR1Q8IVT5 923 aa24.4■■□□□ 1.5
LIME1-203ENST00000465591 C4orf19Q8IY42 314 aa24.4■■□□□ 1.5
LIME1-203ENST00000465591 NLRP7Q8WX94 980 aa24.4■■□□□ 1.5
LIME1-203ENST00000465591 SUCLA2Q9P2R7 463 aaPredicted RBP24.4■■□□□ 1.5
LIME1-203ENST00000465591 LRFN2Q9ULH4 789 aa24.4■■□□□ 1.5
LIME1-203ENST00000465591 PCDHB7Q9Y5E2 793 aa24.4■■□□□ 1.5
LIME1-203ENST00000465591 A0A087WZ62 844 aa24.39■■□□□ 1.49
LIME1-203ENST00000465591 GRM6O15303 877 aa24.39■■□□□ 1.49
LIME1-203ENST00000465591 CD2BP2O95400 341 aaKnown RBP24.39■■□□□ 1.49
LIME1-203ENST00000465591 KCNQ1P51787 676 aa24.39■■□□□ 1.49
LIME1-203ENST00000465591 HMGN5P82970 282 aaKnown RBP24.39■■□□□ 1.49
LIME1-203ENST00000465591 ZNF710Q8N1W2 664 aa24.39■■□□□ 1.49
LIME1-203ENST00000465591 FBXO18Q8NFZ0 1043 aa24.39■■□□□ 1.49
LIME1-203ENST00000465591 CEP170P1Q96L14 293 aa24.39■■□□□ 1.49
LIME1-203ENST00000465591 SCLT1Q96NL6 688 aa24.39■■□□□ 1.49
LIME1-203ENST00000465591 EIF2AK1Q9BQI3 630 aaKnown RBP24.39■■□□□ 1.49
LIME1-203ENST00000465591 FDXACB1Q9BRP7 624 aaPredicted RBP24.39■■□□□ 1.49
LIME1-203ENST00000465591 TTC12Q9H892 705 aaPredicted RBP24.39■■□□□ 1.49
LIME1-203ENST00000465591 BMP2KQ9NSY1 1161 aaPredicted RBP24.39■■□□□ 1.49
LIME1-203ENST00000465591 HCSTQ9UBK5 93 aa24.39■■□□□ 1.49
LIME1-203ENST00000465591 PCDHA12Q9UN75 941 aa24.39■■□□□ 1.49
LIME1-203ENST00000465591 GTF3C3Q9Y5Q9 886 aa24.39■■□□□ 1.49
LIME1-203ENST00000465591 SLITRK3O94933 977 aa24.38■■□□□ 1.49
LIME1-203ENST00000465591 RB1P06400 928 aa24.38■■□□□ 1.49
LIME1-203ENST00000465591 FGFR1P11362 822 aa24.38■■□□□ 1.49
LIME1-203ENST00000465591 YWHABP31946 246 aaKnown RBP24.38■■□□□ 1.49
LIME1-203ENST00000465591 MCM7P33993 719 aa24.38■■□□□ 1.49
LIME1-203ENST00000465591 TXKP42681 527 aa24.38■■□□□ 1.49
LIME1-203ENST00000465591 SAFBQ15424 915 aaKnown RBP eCLIP24.38■■□□□ 1.49
LIME1-203ENST00000465591 FAM43BQ6ZT52 329 aaPredicted RBP24.38■■□□□ 1.49
LIME1-203ENST00000465591 RHPN2Q8IUC4 686 aa24.38■■□□□ 1.49
LIME1-203ENST00000465591 DHX33Q9H6R0 707 aaKnown RBP24.38■■□□□ 1.49
LIME1-203ENST00000465591 RNF19AQ9NV58 838 aa24.38■■□□□ 1.49
LIME1-203ENST00000465591 RWDD3Q9Y3V2 267 aa24.38■■□□□ 1.49
LIME1-203ENST00000465591 PLXNA4Q9HCM2 1894 aa24.38■■□□□ 1.49
LIME1-203ENST00000465591 DKC1O60832 514 aaKnown RBP eCLIP24.37■■□□□ 1.49
LIME1-203ENST00000465591 BMP1P13497 986 aa24.37■■□□□ 1.49
LIME1-203ENST00000465591 PTPROQ16827 1216 aa24.37■■□□□ 1.49
LIME1-203ENST00000465591 TPH2Q8IWU9 490 aa24.37■■□□□ 1.49
LIME1-203ENST00000465591 SYMPKQ92797 1274 aaKnown RBP24.37■■□□□ 1.49
LIME1-203ENST00000465591 HLA-CQ95604 372 aa24.37■■□□□ 1.49
LIME1-203ENST00000465591 HSD17B14Q9BPX1 270 aa24.37■■□□□ 1.49
LIME1-203ENST00000465591 ZSWIM4Q9H7M6 989 aa24.37■■□□□ 1.49
LIME1-203ENST00000465591 TMEM161AQ9NX61 479 aa24.37■■□□□ 1.49
LIME1-203ENST00000465591 COG5Q9UP83 839 aa24.37■■□□□ 1.49
LIME1-203ENST00000465591 POTEMA6NI47 508 aa24.36■■□□□ 1.49
LIME1-203ENST00000465591 TBKBP1A7MCY6 615 aa24.36■■□□□ 1.49
LIME1-203ENST00000465591 DNM2P50570 870 aa24.36■■□□□ 1.49
LIME1-203ENST00000465591 FAM184AQ8NB25 1140 aa24.36■■□□□ 1.49
LIME1-203ENST00000465591 TMEM143Q96AN5 459 aa24.36■■□□□ 1.49
LIME1-203ENST00000465591 NLRP4Q96MN2 994 aa24.36■■□□□ 1.49
LIME1-203ENST00000465591 C11orf84Q9BUA3 381 aaPredicted RBP24.36■■□□□ 1.49
LIME1-203ENST00000465591 GCOM2Q9BZD3 368 aaPredicted RBP24.36■■□□□ 1.49
LIME1-203ENST00000465591 FOXP1Q9H334 677 aaPredicted RBP24.36■■□□□ 1.49
LIME1-203ENST00000465591 ALG13Q9NP73 1137 aaKnown RBP24.36■■□□□ 1.49
LIME1-203ENST00000465591 CSPG5O95196 566 aa24.35■■□□□ 1.49
LIME1-203ENST00000465591 POLGP54098 1239 aaPredicted RBP24.35■■□□□ 1.49
LIME1-203ENST00000465591 CAMK1Q14012 370 aa24.35■■□□□ 1.49
LIME1-203ENST00000465591 ZNF174Q15697 407 aa24.35■■□□□ 1.49
LIME1-203ENST00000465591 XKR9Q5GH70 373 aa24.35■■□□□ 1.49
LIME1-203ENST00000465591 TCEAL5Q5H9L2 206 aa24.35■■□□□ 1.49
LIME1-203ENST00000465591 ZNF410Q86VK4 478 aa24.35■■□□□ 1.49
LIME1-203ENST00000465591 ADAMTS19Q8TE59 1207 aa24.35■■□□□ 1.49
LIME1-203ENST00000465591 PLVAPQ9BX97 442 aa24.35■■□□□ 1.49
LIME1-203ENST00000465591 ELAC1Q9H777 363 aaKnown RBP24.35■■□□□ 1.49
LIME1-203ENST00000465591 ATP6V0A4Q9HBG4 840 aa24.35■■□□□ 1.49
LIME1-203ENST00000465591 PLAGL2Q9UPG8 496 aa24.35■■□□□ 1.49
LIME1-203ENST00000465591 A0A087WWV3 80 aa24.34■■□□□ 1.49
LIME1-203ENST00000465591 ITGB1P05556 798 aa24.34■■□□□ 1.49
LIME1-203ENST00000465591 ZSCAN20P17040 1043 aaPredicted RBP24.34■■□□□ 1.49
LIME1-203ENST00000465591 DNAJB1P25685 340 aa24.34■■□□□ 1.49
LIME1-203ENST00000465591 NBR1Q14596 966 aa24.34■■□□□ 1.49
LIME1-203ENST00000465591 TIGD5Q53EQ6 642 aa24.34■■□□□ 1.49
LIME1-203ENST00000465591 ECHDC2Q86YB7 292 aa24.34■■□□□ 1.49
LIME1-203ENST00000465591 SLC7A3Q8WY07 619 aa24.34■■□□□ 1.49
LIME1-203ENST00000465591 NECAB3Q96P71 396 aaPredicted RBP24.34■■□□□ 1.49
LIME1-203ENST00000465591 JPH2Q9BR39 696 aaPredicted RBP24.34■■□□□ 1.49
LIME1-203ENST00000465591 IFT122Q9HBG6 1241 aa24.34■■□□□ 1.49
LIME1-203ENST00000465591 XPNPEP1Q9NQW7 623 aa24.34■■□□□ 1.49
LIME1-203ENST00000465591 COL4A3BPQ9Y5P4 624 aa24.34■■□□□ 1.49
LIME1-203ENST00000465591 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP24.33■■□□□ 1.49
LIME1-203ENST00000465591 LYPLA2O95372 231 aa24.33■■□□□ 1.49
LIME1-203ENST00000465591 ATF7P17544 494 aaPredicted RBP24.33■■□□□ 1.49
LIME1-203ENST00000465591 RFC5P40937 340 aa24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms