RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 PPP2R2AP63151 447 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 EXOC3L4Q17RC7 722 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 CYB5D1Q6P9G0 228 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 MOXD1Q6UVY6 613 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 ARFGAP2Q8N6H7 521 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 SCFD1Q8WVM8 642 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 LENG9Q96B70 501 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 LRRC45Q96CN5 670 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 GMCL1Q96IK5 515 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 TACO1Q9BSH4 297 aaKnown RBP13.51□□□□□ -0.25
HDAC4-208ENST00000463007 PI4KBQ9UBF8 816 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 ARMCX3Q9UH62 379 aaPredicted RBP13.51□□□□□ -0.25
HDAC4-208ENST00000463007 PCNTO95613 3336 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 CHUKO15111 745 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 UCHL3P15374 230 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 IKQ13123 557 aaPredicted RBP13.51□□□□□ -0.25
HDAC4-208ENST00000463007 RRP1BQ14684 758 aaKnown RBP13.51□□□□□ -0.25
HDAC4-208ENST00000463007 NAA25Q14CX7 972 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 SNCBQ16143 134 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 GKAP1Q5VSY0 366 aaPredicted RBP13.51□□□□□ -0.25
HDAC4-208ENST00000463007 MSL1Q68DK7 614 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 ELAC2Q9BQ52 826 aaKnown RBP13.51□□□□□ -0.25
HDAC4-208ENST00000463007 ISCUQ9H1K1 167 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 PSTPIP2Q9H939 334 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 NAGPAQ9UK23 515 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 SUFUQ9UMX1 484 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 SMCHD1A6NHR9 2005 aa13.5□□□□□ -0.25
HDAC4-208ENST00000463007 UTRNP46939 3433 aa13.5□□□□□ -0.25
HDAC4-208ENST00000463007 SWT1Q5T5J6 900 aaKnown RBP13.5□□□□□ -0.25
HDAC4-208ENST00000463007 MAEAQ7L5Y9 396 aa13.5□□□□□ -0.25
HDAC4-208ENST00000463007 CCDC65Q8IXS2 484 aa13.5□□□□□ -0.25
HDAC4-208ENST00000463007 ZC3H3Q8IXZ2 948 aaKnown RBP13.5□□□□□ -0.25
HDAC4-208ENST00000463007 ETNPPLQ8TBG4 499 aa13.5□□□□□ -0.25
HDAC4-208ENST00000463007 RBM46Q8TBY0 533 aaKnown RBP13.5□□□□□ -0.25
HDAC4-208ENST00000463007 HVCN1Q96D96 273 aa13.5□□□□□ -0.25
HDAC4-208ENST00000463007 THOC1Q96FV9 657 aaKnown RBP13.5□□□□□ -0.25
HDAC4-208ENST00000463007 UTP11Q9Y3A2 253 aaKnown RBP13.5□□□□□ -0.25
HDAC4-208ENST00000463007 MRPL12P52815 198 aaKnown RBP13.5□□□□□ -0.25
HDAC4-208ENST00000463007 KIAA0825Q8IV33 1275 aa13.5□□□□□ -0.25
HDAC4-208ENST00000463007 PARP9Q8IXQ6 854 aa13.5□□□□□ -0.25
HDAC4-208ENST00000463007 MTFR1LQ9H019 292 aa13.5□□□□□ -0.25
HDAC4-208ENST00000463007 SLC24A3Q9HC58 644 aa13.5□□□□□ -0.25
HDAC4-208ENST00000463007 L3MBTL1Q9Y468 752 aa13.5□□□□□ -0.25
HDAC4-208ENST00000463007 CHMP2AO43633 222 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 GCNT3O95395 438 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 MYBP10242 640 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 XRCC5P13010 732 aaKnown RBP13.49□□□□□ -0.25
HDAC4-208ENST00000463007 ECHS1P30084 290 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 GBP2P32456 591 aaPredicted RBP13.49□□□□□ -0.25
HDAC4-208ENST00000463007 HSPA9P38646 679 aaKnown RBP13.49□□□□□ -0.25
HDAC4-208ENST00000463007 USP11P51784 963 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 USH1GQ495M9 461 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 PRR16Q569H4 304 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 BTNL9Q6UXG8 535 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 ZNF572Q7Z3I7 529 aaPredicted RBP13.49□□□□□ -0.25
HDAC4-208ENST00000463007 SFR1Q86XK3 245 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 GCNT4Q9P109 453 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 TPX2Q9ULW0 747 aaKnown RBP13.49□□□□□ -0.25
HDAC4-208ENST00000463007 PCDHGC5Q9Y5F6 944 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 YDJCA8MPS7 323 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 SCTRP47872 440 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 IFI35P80217 286 aaPredicted RBP13.49□□□□□ -0.25
HDAC4-208ENST00000463007 PSMD2Q13200 908 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 RUFY4Q6ZNE9 571 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 FUKQ8N0W3 1084 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 ELMO3Q96BJ8 720 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 GLT8D2Q9H1C3 349 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 SYNPO2Q9UMS6 1093 aa13.49□□□□□ -0.25
HDAC4-208ENST00000463007 H2AFZP0C0S5 128 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 CHN1P15882 459 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 FGFR4P22455 802 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 CLNS1AP54105 237 aaKnown RBP13.48□□□□□ -0.25
HDAC4-208ENST00000463007 SEPT2Q15019 361 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 CERKLQ49MI3 558 aaPredicted RBP13.48□□□□□ -0.25
HDAC4-208ENST00000463007 ZNF746Q6NUN9 644 aaPredicted RBP13.48□□□□□ -0.25
HDAC4-208ENST00000463007 TMEM179Q6ZVK1 233 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 H2AFVQ71UI9 128 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 TRIM59Q8IWR1 403 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 DYDC1Q8WWB3 177 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 FMO2Q99518 471 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.48□□□□□ -0.257e-8■■□□□ 11.5
HDAC4-208ENST00000463007 DBR1Q9UK59 544 aaKnown RBP13.48□□□□□ -0.25
HDAC4-208ENST00000463007 STK38LQ9Y2H1 464 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 TRAPPC3O43617 180 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 APBA3O96018 575 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 MMEP08473 750 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 ZKSCAN8Q15776 578 aaPredicted RBP13.48□□□□□ -0.25
HDAC4-208ENST00000463007 TPCN2Q8NHX9 752 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 PIGOQ8TEQ8 1089 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 NAP1L4Q99733 375 aaKnown RBP13.48□□□□□ -0.25
HDAC4-208ENST00000463007 AZI2Q9H6S1 392 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 PLCB1Q9NQ66 1216 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 RNF14Q9UBS8 474 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 PPP1R9AQ9ULJ8 1098 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 ENTPD3O75355 529 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 SMTNP53814 917 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 GALCP54803 685 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 TCP10Q12799 353 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 AP3B2Q13367 1082 aa13.48□□□□□ -0.25
HDAC4-208ENST00000463007 ACCSLQ4AC99 568 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms