RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 VCPKMTQ9H867 229 aa6.68□□□□□ -1.34
VPS13D-202ENST00000460333 NHEJ1Q9H9Q4 299 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-202ENST00000460333 FAM207AQ9NSI2 230 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-202ENST00000460333 SCINQ9Y6U3 715 aa6.68□□□□□ -1.34
VPS13D-202ENST00000460333 ABCB11O95342 1321 aa6.68□□□□□ -1.34
VPS13D-202ENST00000460333 ARHGAP10A1A4S6 786 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 DDTLA6NHG4 134 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-202ENST00000460333 HGSO14964 777 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-202ENST00000460333 STMN1P16949 149 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 PSMC4P43686 418 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 PRR16Q569H4 304 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 SPICE1Q8N0Z3 855 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 GSDMBQ8TAX9 411 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 STAMQ92783 540 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 FAM20AQ96MK3 541 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 WDR24Q96S15 920 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 TMEM60Q9H2L4 133 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 MYOZ2Q9NPC6 264 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 ABHD10Q9NUJ1 306 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 SBF2Q86WG5 1849 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 BUB1O43683 1085 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 DKC1O60832 514 aaKnown RBP eCLIP6.67□□□□□ -1.34
VPS13D-202ENST00000460333 FAM107AO95990 144 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 H2AFZP0C0S5 128 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 KLC1Q07866 573 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 UBE2SQ16763 222 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 CCDC14Q49A88 953 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 AGBL2Q5U5Z8 902 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 H2AFVQ71UI9 128 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 LPAR1Q92633 364 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 CALR3Q96L12 384 aaKnown RBP6.67□□□□□ -1.34
VPS13D-202ENST00000460333 TUBGCP2Q9BSJ2 902 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 TMEM106CQ9BVX2 250 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 LSM14BQ9BX40 385 aaKnown RBP6.67□□□□□ -1.34
VPS13D-202ENST00000460333 DRC3Q9H069 523 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 HAUS2Q9NVX0 235 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 CCPG1Q9ULG6 757 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 ZBTB21Q9ULJ3 1066 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 NFU1Q9UMS0 254 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 PCDHA13Q9Y5I0 950 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 RASGRF2O14827 1237 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 THAP12O43422 761 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 PLCG1P19174 1290 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 KCNB1Q14721 858 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 BEND6Q5SZJ8 279 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-202ENST00000460333 TTBK2Q6IQ55 1244 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 PACS2Q86VP3 889 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 RMDN2Q96LZ7 410 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 FMO2Q99518 471 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 ELAC2Q9BQ52 826 aaKnown RBP6.67□□□□□ -1.34
VPS13D-202ENST00000460333 ECT2Q9H8V3 914 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 ETAA1Q9NY74 926 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 FAM198AQ9UFP1 575 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.67□□□□□ -1.34
VPS13D-202ENST00000460333 MAPK8IP1Q9UQF2 711 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 FRMD4BQ9Y2L6 1034 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 UBR3Q6ZT12 1888 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 C4AP0C0L4 1744 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 ARHGAP42A6NI28 874 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 TBX3O15119 743 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 IFNAR2P48551 515 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 PLCB3Q01970 1234 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 LIN9Q5TKA1 542 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 CCNI2Q6ZMN8 369 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-202ENST00000460333 MIGA2Q7L4E1 593 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 GRAMD1CQ8IYS0 662 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 AFAP1L2Q8N4X5 818 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 WDR11Q9BZH6 1224 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 HACL1Q9UJ83 578 aa6.67□□□□□ -1.34
VPS13D-202ENST00000460333 ITIH6Q6UXX5 1313 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 PVALEFA0A1B0GWK0 134 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 FAM13AO94988 1023 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 GSTA2P09210 222 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 RFX1P22670 979 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 EHHADHQ08426 723 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 NR1H3Q13133 447 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 FAM83BQ5T0W9 1011 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 CYB5D1Q6P9G0 228 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 MOXD1Q6UVY6 613 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 RASGRP2Q7LDG7 609 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 ZC3H18Q86VM9 953 aaKnown RBP6.66□□□□□ -1.34
VPS13D-202ENST00000460333 KCTD17Q8N5Z5 321 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 SAMSN1Q9NSI8 373 aaKnown RBP6.66□□□□□ -1.34
VPS13D-202ENST00000460333 TXNDC16Q9P2K2 825 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 MYH2Q9UKX2 1941 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 CACNA1SQ13698 1873 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 CHD4Q14839 1912 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 CYTH3O43739 400 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 GAS7O60861 476 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 GSTA1P08263 222 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 LSP1P33241 339 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 FXR2P51116 673 aaKnown RBP eCLIP6.66□□□□□ -1.343e-7■■■■□ 22.9
VPS13D-202ENST00000460333 CXCL9Q07325 125 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 DCAF17Q5H9S7 520 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-202ENST00000460333 TATDN1Q6P1N9 297 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 KDM7AQ6ZMT4 941 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 APBB1IPQ7Z5R6 666 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-202ENST00000460333 AGGF1Q8N302 714 aaeCLIP6.66□□□□□ -1.34
VPS13D-202ENST00000460333 MB21D1Q8N884 522 aa6.66□□□□□ -1.34
VPS13D-202ENST00000460333 THOC1Q96FV9 657 aaKnown RBP6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms