RNA–Protein interactions for RNA: ENST00000457422.6

CCDC43-202, Transcript of coiled-coil domain containing 43, humanhuman

TSL 1 (best) BASIC

Gene CCDC43, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-202ENST00000457422 GJA3Q9Y6H8 435 aa18.21■□□□□ 0.51
CCDC43-202ENST00000457422 LTBP3Q9NS15 1303 aa18.21■□□□□ 0.5
CCDC43-202ENST00000457422 K7ENM7 598 aa18.2■□□□□ 0.5
CCDC43-202ENST00000457422 GFPT2O94808 682 aa18.2■□□□□ 0.5
CCDC43-202ENST00000457422 FERP16591 822 aa18.2■□□□□ 0.5
CCDC43-202ENST00000457422 CXCR5P32302 372 aa18.2■□□□□ 0.5
CCDC43-202ENST00000457422 PAFAH1B1P43034 410 aa18.2■□□□□ 0.5
CCDC43-202ENST00000457422 SPP2Q13103 211 aa18.2■□□□□ 0.5
CCDC43-202ENST00000457422 PLS1Q14651 629 aa18.2■□□□□ 0.5
CCDC43-202ENST00000457422 MEI1Q5TIA1 1274 aa18.2■□□□□ 0.5
CCDC43-202ENST00000457422 C12orf56Q8IXR9 622 aa18.2■□□□□ 0.5
CCDC43-202ENST00000457422 TMEM206Q9H813 350 aa18.2■□□□□ 0.5
CCDC43-202ENST00000457422 SAMM50Q9Y512 469 aa18.2■□□□□ 0.5
CCDC43-202ENST00000457422 CCDC181Q5TID7 509 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 DCAF15Q66K64 600 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 VPS36Q86VN1 386 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 C4orf19Q8IY42 314 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 WNK4Q96J92 1243 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 TRERF1Q96PN7 1200 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 PDCD2LQ9BRP1 358 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 STK33Q9BYT3 514 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 ST6GALNAC4Q9H4F1 302 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 PXMP2Q9NR77 195 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 SMARCAL1Q9NZC9 954 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 CNOT7Q9UIV1 285 aaKnown RBP18.19■□□□□ 0.5
CCDC43-202ENST00000457422 ZNF112Q9UJU3 913 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 PRDM4Q9UKN5 801 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 COL11A1P12107 1806 aaPredicted RBP18.19■□□□□ 0.5
CCDC43-202ENST00000457422 H3BQF6 201 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 POLR3GO15318 223 aaPredicted RBP18.19■□□□□ 0.5
CCDC43-202ENST00000457422 MYCLP12524 364 aaPredicted RBP18.19■□□□□ 0.5
CCDC43-202ENST00000457422 PLS3P13797 630 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 STAT1P42224 750 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 JAK3P52333 1124 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 BFSP1Q12934 665 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 XRRA1Q6P2D8 792 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 ALKBH5Q6P6C2 394 aaKnown RBP18.19■□□□□ 0.5
CCDC43-202ENST00000457422 CCNI2Q6ZMN8 369 aaPredicted RBP18.19■□□□□ 0.5
CCDC43-202ENST00000457422 FMNL3Q8IVF7 1028 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 SYCP3Q8IZU3 236 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 ATG4CQ96DT6 458 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 PDE11AQ9HCR9 933 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 EHD2Q9NZN4 543 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 INTUQ9ULD6 942 aa18.19■□□□□ 0.5
CCDC43-202ENST00000457422 PHIPQ8WWQ0 1821 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 WDR81Q562E7 1941 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 GRID2IPA4D2P6 1211 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 VWA5AO00534 786 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 TRIM49P0CI25 452 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 TRIM49CP0CI26 452 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 BACE1P56817 501 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 IFI16Q16666 785 aaKnown RBP18.18■□□□□ 0.5
CCDC43-202ENST00000457422 UGCGQ16739 394 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 CFAP221Q4G0U5 840 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 CBWD6Q4V339 395 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 CBWD3Q5JTY5 395 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 CBWD5Q5RIA9 395 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 NSMFQ6X4W1 530 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 RNF207Q6ZRF8 634 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 RMDN3Q96TC7 470 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 ACBD3Q9H3P7 528 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 BCS1LQ9Y276 419 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 LRRIQ3A6PVS8 624 aaPredicted RBP18.18■□□□□ 0.5
CCDC43-202ENST00000457422 F8VZ95 297 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 EXOC3O60645 756 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 YWHABP31946 246 aaKnown RBP18.18■□□□□ 0.5
CCDC43-202ENST00000457422 SFNP31947 248 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 SOX5P35711 763 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 ZNF771Q7L3S4 317 aaPredicted RBP18.18■□□□□ 0.5
CCDC43-202ENST00000457422 SCYL3Q8IZE3 742 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 ACCSQ96QU6 501 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 AS3MTQ9HBK9 375 aa18.18■□□□□ 0.5
CCDC43-202ENST00000457422 A0A0A6YYK5 440 aaPredicted RBP18.17■□□□□ 0.5
CCDC43-202ENST00000457422 TMEM150BA6NC51 233 aa18.17■□□□□ 0.5
CCDC43-202ENST00000457422 FZD9O00144 591 aa18.17■□□□□ 0.5
CCDC43-202ENST00000457422 CES2O00748 559 aa18.17■□□□□ 0.5
CCDC43-202ENST00000457422 ZMYND10O75800 440 aa18.17■□□□□ 0.5
CCDC43-202ENST00000457422 FTCDO95954 541 aa18.17■□□□□ 0.5
CCDC43-202ENST00000457422 RFX1P22670 979 aa18.17■□□□□ 0.5
CCDC43-202ENST00000457422 SNRPFP62306 86 aaKnown RBP18.17■□□□□ 0.5
CCDC43-202ENST00000457422 KRT76Q01546 638 aa18.17■□□□□ 0.5
CCDC43-202ENST00000457422 GLE1Q53GS7 698 aaKnown RBP18.17■□□□□ 0.5
CCDC43-202ENST00000457422 RDM1Q8NG50 284 aa18.17■□□□□ 0.5
CCDC43-202ENST00000457422 OLIG1Q8TAK6 271 aa18.17■□□□□ 0.5
CCDC43-202ENST00000457422 C12orf42Q96LP6 360 aa18.17■□□□□ 0.5
CCDC43-202ENST00000457422 RNF146Q9NTX7 359 aa18.17■□□□□ 0.5
CCDC43-202ENST00000457422 WDR64B1ANS9 1081 aa18.16■□□□□ 0.5
CCDC43-202ENST00000457422 MAPK13O15264 365 aa18.16■□□□□ 0.5
CCDC43-202ENST00000457422 EVI5O60447 810 aa18.16■□□□□ 0.5
CCDC43-202ENST00000457422 ATP9AO75110 1047 aa18.16■□□□□ 0.5
CCDC43-202ENST00000457422 PSMC5P62195 406 aa18.16■□□□□ 0.5
CCDC43-202ENST00000457422 GTF2BQ00403 316 aa18.16■□□□□ 0.5
CCDC43-202ENST00000457422 ARHGEF16Q5VV41 709 aa18.16■□□□□ 0.5
CCDC43-202ENST00000457422 INTS8Q75QN2 995 aaKnown RBP18.16■□□□□ 0.5
CCDC43-202ENST00000457422 SLC17A8Q8NDX2 589 aa18.16■□□□□ 0.5
CCDC43-202ENST00000457422 REPS2Q8NFH8 660 aa18.16■□□□□ 0.5
CCDC43-202ENST00000457422 SH2D3AQ9BRG2 576 aa18.16■□□□□ 0.5
CCDC43-202ENST00000457422 LRRC1Q9BTT6 524 aa18.16■□□□□ 0.5
CCDC43-202ENST00000457422 INTS2Q9H0H0 1204 aaKnown RBP18.16■□□□□ 0.5
CCDC43-202ENST00000457422 ZCCHC17Q9NP64 241 aaKnown RBP18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms