RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 PTPROQ16827 1216 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 SPRED1Q7Z699 444 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 RTN4RL1Q86UN2 441 aaPredicted RBP5.57□□□□□ -1.52
USP40-209ENST00000452724 NME9Q86XW9 330 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 ZZZ3Q8IYH5 903 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 ATL2Q8NHH9 583 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 E2F7Q96AV8 911 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 C16orf92Q96LL3 132 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 PCDH12Q9NPG4 1184 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 GALNT8Q9NY28 637 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 ATP8A1Q9Y2Q0 1164 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 HMGCRP04035 888 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 ZNF888P0CJ79 500 aaPredicted RBP5.56□□□□□ -1.52
USP40-209ENST00000452724 C6P13671 934 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 GDF5P43026 501 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 DDB1Q16531 1140 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 TCTN3Q6NUS6 607 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 OTOP2Q7RTS6 562 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 TAX1BP1Q86VP1 789 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 DDX42Q86XP3 938 aaKnown RBP eCLIP5.56□□□□□ -1.52
USP40-209ENST00000452724 Q8TCH9 128 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 SLC5A5Q92911 643 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 FOXRED1Q96CU9 486 aaPredicted RBP5.56□□□□□ -1.52
USP40-209ENST00000452724 NEIL1Q96FI4 390 aaPredicted RBP5.56□□□□□ -1.52
USP40-209ENST00000452724 GPATCH3Q96I76 525 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 GNRHR2Q96P88 292 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 AMNQ9BXJ7 453 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 BRINP2Q9C0B6 783 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 ZMAT4Q9H898 229 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 TESMINQ9Y4I5 508 aa5.56□□□□□ -1.52
USP40-209ENST00000452724 GPR39O43194 453 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 FSHBP01225 129 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 IBSPP21815 317 aaPredicted RBP5.55□□□□□ -1.52
USP40-209ENST00000452724 CD40P25942 277 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 LSP1P33241 339 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 ECE1P42892 770 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 PHC1P78364 1004 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 ADCY1Q08828 1119 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 LRRC32Q14392 662 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 PRKD1Q15139 912 aaPredicted RBP5.55□□□□□ -1.52
USP40-209ENST00000452724 CDSNQ15517 529 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 TERF2Q15554 542 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 GPR158Q5T848 1215 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 LRSAM1Q6UWE0 723 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 LHFPL2Q6ZUX7 228 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 WDR66Q8TBY9 1149 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 CALML6Q8TD86 181 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 RTF1Q92541 710 aaKnown RBP5.55□□□□□ -1.52
USP40-209ENST00000452724 FOXB1Q99853 325 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 BTBD2Q9BX70 525 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 ZDHHC5Q9C0B5 715 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 VPS11Q9H270 941 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 MSL2Q9HCI7 577 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 ZFR2Q9UPR6 939 aaKnown RBP5.55□□□□□ -1.52
USP40-209ENST00000452724 NR2E1Q9Y466 385 aa5.55□□□□□ -1.52
USP40-209ENST00000452724 UBA6A0AVT1 1052 aaPredicted RBP5.54□□□□□ -1.52
USP40-209ENST00000452724 AKAP8O43823 692 aaKnown RBP5.54□□□□□ -1.52
USP40-209ENST00000452724 ULK1O75385 1050 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 PRLP01236 227 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 CR2P20023 1033 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 COMTP21964 271 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 KCNQ1P51787 676 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 RRADP55042 308 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 IL13RA1P78552 427 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 TMPRSS15P98073 1019 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 SLC6A3Q01959 620 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 ALDH6A1Q02252 535 aaKnown RBP5.54□□□□□ -1.52
USP40-209ENST00000452724 ROM1Q03395 351 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 TTC38Q5R3I4 469 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 BROXQ5VW32 411 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 RNF219Q5W0B1 726 aaPredicted RBP5.54□□□□□ -1.52
USP40-209ENST00000452724 HDGFL2Q7Z4V5 671 aaPredicted RBP5.54□□□□□ -1.52
USP40-209ENST00000452724 SPATS2Q86XZ4 545 aaKnown RBP5.54□□□□□ -1.52
USP40-209ENST00000452724 C7orf31Q8N865 590 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 ZNF610Q8N9Z0 462 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 SLC16A11Q8NCK7 471 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 OAZ3Q9UMX2 235 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 PTPN22Q9Y2R2 807 aa5.54□□□□□ -1.52
USP40-209ENST00000452724 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.53□□□□□ -1.52
USP40-209ENST00000452724 FOXS1O43638 330 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 CDC14BO60729 498 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 FZD7O75084 574 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 CDK11BP21127 795 aaKnown RBP5.53□□□□□ -1.52
USP40-209ENST00000452724 ADCY8P40145 1251 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 CDKN1CP49918 316 aaPredicted RBP5.53□□□□□ -1.52
USP40-209ENST00000452724 MEOX1P50221 254 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 SESN3P58005 492 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 STILQ15468 1287 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 SLFN12LQ6IEE8 588 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 CRIP3Q6Q6R5 217 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 PHYKPLQ8IUZ5 450 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 MAML3Q96JK9 1138 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 WWC2-AS2Q96NR7 200 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 TUBGCP5Q96RT8 1024 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 ADOQ96SZ5 270 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 OR10A5Q9H207 317 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 C12orf65Q9H3J6 166 aaKnown RBP5.53□□□□□ -1.52
USP40-209ENST00000452724 MS4A5Q9H3V2 200 aa5.53□□□□□ -1.52
USP40-209ENST00000452724 PUF60Q9UHX1 559 aaKnown RBP5.53□□□□□ -1.52
USP40-209ENST00000452724 MSRAQ9UJ68 235 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms