RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 PPP2R5AQ15172 486 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 FKBP1CQ5VVH2 108 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 SLC9A9Q8IVB4 645 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 FAM76AQ8TAV0 307 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 CASKIN2Q8WXE0 1202 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 PLEKHA4Q9H4M7 779 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 DNAJC12Q9UKB3 198 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 ZNF536O15090 1300 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 RAD51CO43502 376 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 SHOX2O60902 331 aaPredicted RBP17.44■□□□□ 0.38
SHQ1-202ENST00000444040 CYP2J2P51589 502 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 TNNC1P63316 161 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 PAK2Q13177 524 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 DRAP1Q14919 205 aaPredicted RBP17.44■□□□□ 0.38
SHQ1-202ENST00000444040 FOXR1Q6PIV2 292 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 OGFOD1Q8N543 542 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 U2AF1L4Q8WU68 220 aaKnown RBP17.44■□□□□ 0.38
SHQ1-202ENST00000444040 VEZTQ9HBM0 779 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 PGAP2Q9UHJ9 254 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 FRMD4BQ9Y2L6 1034 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 COL4A5P29400 1685 aa17.44■□□□□ 0.38
SHQ1-202ENST00000444040 GOLGA8KD6RF30 607 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 HIP1RO75146 1068 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 TRIM49P0CI25 452 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 TRIM49CP0CI26 452 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 NPEPPSP55786 919 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 SAMD1Q6SPF0 538 aaPredicted RBP17.43■□□□□ 0.38
SHQ1-202ENST00000444040 AGBL1Q96MI9 1066 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 COL20A1Q9P218 1284 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 CLSTN1O94985 981 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 BCRP11274 1271 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 GALCP54803 685 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 TRADDQ15628 312 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 IQCKQ8N0W5 287 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 MREGQ8N565 214 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 METTL13Q8N6R0 699 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 IFT81Q8WYA0 676 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 ZIM3Q96PE6 472 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 RPTORQ8N122 1335 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 ARHGEF35A5YM69 484 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 OPA1O60313 960 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 NEK9Q8TD19 979 aa17.43■□□□□ 0.38
SHQ1-202ENST00000444040 SUCLA2Q9P2R7 463 aaPredicted RBP17.43■□□□□ 0.38
SHQ1-202ENST00000444040 DHX15O43143 795 aaKnown RBP17.42■□□□□ 0.38
SHQ1-202ENST00000444040 HSF2BPO75031 334 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 ICAM1P05362 532 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 INPP5BP32019 993 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 MAP3K10Q02779 954 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 PPFIA1Q13136 1202 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 PTPROQ16827 1216 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 FAM83AQ86UY5 434 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 NT5DC3Q86UY8 548 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 GLYCTKQ8IVS8 523 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 KLHL7Q8IXQ5 586 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 LMBR1Q8WVP7 490 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 PSMD1Q99460 953 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 INTS2Q9H0H0 1204 aaKnown RBP17.42■□□□□ 0.38
SHQ1-202ENST00000444040 KCNH7Q9NS40 1196 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 APEX2Q9UBZ4 518 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 DDX39AO00148 427 aaKnown RBP17.42■□□□□ 0.38
SHQ1-202ENST00000444040 CEP104O60308 925 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 BFSP1Q12934 665 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 MYBPC2Q14324 1141 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 GRIPAP1Q4V328 841 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 TTMPQ5BVD1 217 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 PEX26Q7Z412 305 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 LARGE2Q8N3Y3 721 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 RASGEF1CQ8N431 466 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 LMO3Q8TAP4 145 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 ARL8AQ96BM9 186 aa17.42■□□□□ 0.38
SHQ1-202ENST00000444040 CALR3Q96L12 384 aaKnown RBP17.42■□□□□ 0.38
SHQ1-202ENST00000444040 BHMG1C9JSJ3 638 aaPredicted RBP17.41■□□□□ 0.38
SHQ1-202ENST00000444040 LMNB1P20700 586 aa17.41■□□□□ 0.38
SHQ1-202ENST00000444040 PADI6Q6TGC4 694 aa17.41■□□□□ 0.38
SHQ1-202ENST00000444040 MTMR14Q8NCE2 650 aa17.41■□□□□ 0.38
SHQ1-202ENST00000444040 IL31RAQ8NI17 732 aa17.41■□□□□ 0.38
SHQ1-202ENST00000444040 CCPG1Q9ULG6 757 aa17.41■□□□□ 0.38
SHQ1-202ENST00000444040 EXOC3O60645 756 aa17.41■□□□□ 0.38
SHQ1-202ENST00000444040 RTKN2Q8IZC4 609 aa17.41■□□□□ 0.38
SHQ1-202ENST00000444040 SYCE1Q8N0S2 351 aa17.41■□□□□ 0.38
SHQ1-202ENST00000444040 CLEC4DQ8WXI8 215 aa17.41■□□□□ 0.38
SHQ1-202ENST00000444040 PIK3R5Q8WYR1 880 aa17.41■□□□□ 0.38
SHQ1-202ENST00000444040 HES6Q96HZ4 224 aa17.41■□□□□ 0.38
SHQ1-202ENST00000444040 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.41■□□□□ 0.38
SHQ1-202ENST00000444040 ZNF277Q9NRM2 450 aaPredicted RBP17.41■□□□□ 0.38
SHQ1-202ENST00000444040 PGRMC1O00264 195 aaKnown RBP17.4■□□□□ 0.38
SHQ1-202ENST00000444040 NFIBO00712 420 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 PHLDB3Q6NSJ2 640 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 MIER3Q7Z3K6 550 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 EIF1ADQ8N9N8 165 aaKnown RBP17.4■□□□□ 0.38
SHQ1-202ENST00000444040 WHAMMQ8TF30 809 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 TMEM174Q8WUU8 243 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 CCDC43Q96MW1 224 aaKnown RBP17.4■□□□□ 0.38
SHQ1-202ENST00000444040 OSGEPQ9NPF4 335 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 NOC2LQ9Y3T9 749 aaKnown RBP17.4■□□□□ 0.38
SHQ1-202ENST00000444040 DAAM1Q9Y4D1 1078 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 ZHX2Q9Y6X8 837 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 NCANO14594 1321 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 P4HBP07237 508 aaKnown RBP17.4■□□□□ 0.38
SHQ1-202ENST00000444040 ASNSP08243 561 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms