RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 BMP15O95972 392 aa20.79■□□□□ 0.92
SHH-204ENST00000441114 XRCC6P12956 609 aaKnown RBP eCLIP20.79■□□□□ 0.92
SHH-204ENST00000441114 BECN1Q14457 450 aa20.79■□□□□ 0.92
SHH-204ENST00000441114 RAB30Q15771 203 aa20.79■□□□□ 0.92
SHH-204ENST00000441114 FOXD4L6Q3SYB3 417 aaPredicted RBP20.79■□□□□ 0.92
SHH-204ENST00000441114 ZNF697Q5TEC3 545 aa20.79■□□□□ 0.92
SHH-204ENST00000441114 FOXD4L3Q6VB84 417 aaPredicted RBP20.79■□□□□ 0.92
SHH-204ENST00000441114 MAEAQ7L5Y9 396 aa20.79■□□□□ 0.92
SHH-204ENST00000441114 TIFAQ96CG3 184 aa20.79■□□□□ 0.92
SHH-204ENST00000441114 NLRP4Q96MN2 994 aa20.79■□□□□ 0.92
SHH-204ENST00000441114 FDXACB1Q9BRP7 624 aaPredicted RBP20.79■□□□□ 0.92
SHH-204ENST00000441114 ERVK-5Q9HDB9 667 aa20.79■□□□□ 0.92
SHH-204ENST00000441114 ST3GAL5Q9UNP4 418 aa20.79■□□□□ 0.92
SHH-204ENST00000441114 YBX2Q9Y2T7 364 aaKnown RBP20.79■□□□□ 0.92
SHH-204ENST00000441114 ARHGEF35A5YM69 484 aa20.78■□□□□ 0.92
SHH-204ENST00000441114 ENPP3O14638 875 aa20.78■□□□□ 0.92
SHH-204ENST00000441114 CSDE1O75534 798 aaKnown RBP20.78■□□□□ 0.92
SHH-204ENST00000441114 FGFR4P22455 802 aa20.78■□□□□ 0.92
SHH-204ENST00000441114 MARCKSP29966 332 aaPredicted RBP20.78■□□□□ 0.92
SHH-204ENST00000441114 FAM228AQ86W67 206 aa20.78■□□□□ 0.92
SHH-204ENST00000441114 DEFB123Q8N688 67 aa20.78■□□□□ 0.92
SHH-204ENST00000441114 TCP11Q8WWU5 503 aa20.78■□□□□ 0.92
SHH-204ENST00000441114 PRPF31Q8WWY3 499 aaKnown RBP20.78■□□□□ 0.92
SHH-204ENST00000441114 USP28Q96RU2 1077 aa20.78■□□□□ 0.92
SHH-204ENST00000441114 PLIN2Q99541 437 aa20.78■□□□□ 0.92
SHH-204ENST00000441114 MMTAG2Q9BU76 263 aaKnown RBP20.78■□□□□ 0.92
SHH-204ENST00000441114 ATP6V0A4Q9HBG4 840 aa20.78■□□□□ 0.92
SHH-204ENST00000441114 XPNPEP1Q9NQW7 623 aa20.78■□□□□ 0.92
SHH-204ENST00000441114 DBR1Q9UK59 544 aaKnown RBP20.78■□□□□ 0.92
SHH-204ENST00000441114 PCDHA11Q9Y5I1 949 aa20.78■□□□□ 0.92
SHH-204ENST00000441114 GPR182O15218 404 aa20.77■□□□□ 0.92
SHH-204ENST00000441114 TLL1O43897 1013 aa20.77■□□□□ 0.92
SHH-204ENST00000441114 DGAT1O75907 488 aa20.77■□□□□ 0.92
SHH-204ENST00000441114 SRGAP2CP0DJJ0 459 aa20.77■□□□□ 0.92
SHH-204ENST00000441114 ZSCAN22P10073 491 aaPredicted RBP20.77■□□□□ 0.92
SHH-204ENST00000441114 MUTP22033 750 aa20.77■□□□□ 0.92
SHH-204ENST00000441114 EIF4BP23588 611 aaKnown RBP20.77■□□□□ 0.92
SHH-204ENST00000441114 GRIN1Q05586 938 aa20.77■□□□□ 0.92
SHH-204ENST00000441114 PKP1Q13835 747 aa20.77■□□□□ 0.92
SHH-204ENST00000441114 ODR4Q5SWX8 454 aa20.77■□□□□ 0.92
SHH-204ENST00000441114 ZNF710Q8N1W2 664 aa20.77■□□□□ 0.92
SHH-204ENST00000441114 PSPC1Q8WXF1 523 aaKnown RBP20.77■□□□□ 0.92
SHH-204ENST00000441114 GCOM2Q9BZD3 368 aaPredicted RBP20.77■□□□□ 0.92
SHH-204ENST00000441114 TMX1Q9H3N1 280 aa20.77■□□□□ 0.92
SHH-204ENST00000441114 TFIP11Q9UBB9 837 aaKnown RBP20.77■□□□□ 0.92
SHH-204ENST00000441114 COL4A3BPQ9Y5P4 624 aa20.77■□□□□ 0.92
SHH-204ENST00000441114 E9PMD0 336 aa20.76■□□□□ 0.91
SHH-204ENST00000441114 GAS2O43903 313 aaKnown RBP20.76■□□□□ 0.91
SHH-204ENST00000441114 F13A1P00488 732 aa20.76■□□□□ 0.91
SHH-204ENST00000441114 DARSP14868 501 aaKnown RBP20.76■□□□□ 0.91
SHH-204ENST00000441114 CDC42EP1Q00587 391 aa20.76■□□□□ 0.91
SHH-204ENST00000441114 LAMTOR4Q0VGL1 99 aa20.76■□□□□ 0.91
SHH-204ENST00000441114 PTPAQ15257 358 aa20.76■□□□□ 0.91
SHH-204ENST00000441114 GPR153Q6NV75 609 aa20.76■□□□□ 0.91
SHH-204ENST00000441114 PADI6Q6TGC4 694 aa20.76■□□□□ 0.91
SHH-204ENST00000441114 RTN4RL1Q86UN2 441 aaPredicted RBP20.76■□□□□ 0.91
SHH-204ENST00000441114 CABP7Q86V35 215 aa20.76■□□□□ 0.91
SHH-204ENST00000441114 LINC01599Q8WXQ3 324 aa20.76■□□□□ 0.91
SHH-204ENST00000441114 FTHL17Q9BXU8 183 aa20.76■□□□□ 0.91
SHH-204ENST00000441114 BHMT2Q9H2M3 363 aa20.76■□□□□ 0.91
SHH-204ENST00000441114 DAXXQ9UER7 740 aaPredicted RBP20.76■□□□□ 0.91
SHH-204ENST00000441114 PDIA4P13667 645 aaKnown RBP20.75■□□□□ 0.91
SHH-204ENST00000441114 ZNF410Q86VK4 478 aa20.75■□□□□ 0.91
SHH-204ENST00000441114 CDK5RAP3Q96JB5 506 aa20.75■□□□□ 0.91
SHH-204ENST00000441114 ZNF396Q96N95 335 aaPredicted RBP20.75■□□□□ 0.91
SHH-204ENST00000441114 TTYH1Q9H313 450 aaPredicted RBP20.75■□□□□ 0.91
SHH-204ENST00000441114 SEMA6BQ9H3T3 888 aa20.75■□□□□ 0.91
SHH-204ENST00000441114 SLC28A3Q9HAS3 691 aa20.75■□□□□ 0.91
SHH-204ENST00000441114 DNM3Q9UQ16 869 aa20.75■□□□□ 0.91
SHH-204ENST00000441114 DENND3A2RUS2 1198 aa20.74■□□□□ 0.91
SHH-204ENST00000441114 MGEA5O60502 916 aa20.74■□□□□ 0.91
SHH-204ENST00000441114 GJB5O95377 273 aa20.74■□□□□ 0.91
SHH-204ENST00000441114 CA3P07451 260 aa20.74■□□□□ 0.91
SHH-204ENST00000441114 UBA7P41226 1012 aa20.74■□□□□ 0.91
SHH-204ENST00000441114 SPECC1Q5M775 1068 aa20.74■□□□□ 0.91
SHH-204ENST00000441114 FAM102BQ5T8I3 360 aa20.74■□□□□ 0.91
SHH-204ENST00000441114 TOP1MTQ969P6 601 aa20.74■□□□□ 0.91
SHH-204ENST00000441114 PNMA5Q96PV4 448 aa20.74■□□□□ 0.91
SHH-204ENST00000441114 ADAM2Q99965 735 aa20.74■□□□□ 0.91
SHH-204ENST00000441114 POLR3FQ9H1D9 316 aaPredicted RBP20.74■□□□□ 0.91
SHH-204ENST00000441114 ZNF576Q9H609 170 aa20.74■□□□□ 0.91
SHH-204ENST00000441114 POLD4Q9HCU8 107 aa20.74■□□□□ 0.91
SHH-204ENST00000441114 GPRC5CQ9NQ84 441 aa20.74■□□□□ 0.91
SHH-204ENST00000441114 LCHNA4D1U4 455 aa20.73■□□□□ 0.91
SHH-204ENST00000441114 ASAP2O43150 1006 aa20.73■□□□□ 0.91
SHH-204ENST00000441114 SSBP05455 408 aaKnown RBP eCLIP20.73■□□□□ 0.91
SHH-204ENST00000441114 LONP1P36776 959 aaKnown RBP20.73■□□□□ 0.91
SHH-204ENST00000441114 GRB10Q13322 594 aa20.73■□□□□ 0.91
SHH-204ENST00000441114 STK38Q15208 465 aa20.73■□□□□ 0.91
SHH-204ENST00000441114 PPP2R2DQ66LE6 453 aa20.73■□□□□ 0.91
SHH-204ENST00000441114 KCNK18Q7Z418 384 aa20.73■□□□□ 0.91
SHH-204ENST00000441114 RNF149Q8NC42 400 aa20.73■□□□□ 0.91
SHH-204ENST00000441114 RASSF8Q8NHQ8 419 aa20.73■□□□□ 0.91
SHH-204ENST00000441114 ASAP3Q8TDY4 903 aa20.73■□□□□ 0.91
SHH-204ENST00000441114 AK8Q96MA6 479 aa20.73■□□□□ 0.91
SHH-204ENST00000441114 CLIC6Q96NY7 704 aa20.73■□□□□ 0.91
SHH-204ENST00000441114 RAD9AQ99638 391 aa20.73■□□□□ 0.91
SHH-204ENST00000441114 INO80BQ9C086 356 aaPredicted RBP20.73■□□□□ 0.91
SHH-204ENST00000441114 CSRNP2Q9H175 543 aa20.73■□□□□ 0.91
SHH-204ENST00000441114 FBXO2Q9UK22 296 aaPredicted RBP20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms