RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 TMEM120BA0PK00 339 aa9.77□□□□□ -0.84
COPB1-202ENST00000439561 USP17L10C9JJH3 530 aa9.77□□□□□ -0.84
COPB1-202ENST00000439561 FXR2P51116 673 aaKnown RBP eCLIP9.77□□□□□ -0.841e-7■■■■□ 25
COPB1-202ENST00000439561 ZNF131P52739 623 aa9.77□□□□□ -0.84
COPB1-202ENST00000439561 CETN1Q12798 172 aa9.77□□□□□ -0.84
COPB1-202ENST00000439561 SEPT14Q6ZU15 432 aa9.77□□□□□ -0.84
COPB1-202ENST00000439561 FAM228AQ86W67 206 aa9.77□□□□□ -0.84
COPB1-202ENST00000439561 SPICE1Q8N0Z3 855 aa9.77□□□□□ -0.84
COPB1-202ENST00000439561 ARMC2Q8NEN0 867 aa9.77□□□□□ -0.84
COPB1-202ENST00000439561 RFFLQ8WZ73 363 aa9.77□□□□□ -0.84
COPB1-202ENST00000439561 THAP2Q9H0W7 228 aa9.77□□□□□ -0.84
COPB1-202ENST00000439561 IKZF4Q9H2S9 585 aa9.77□□□□□ -0.84
COPB1-202ENST00000439561 SUCLA2Q9P2R7 463 aaPredicted RBP9.77□□□□□ -0.84
COPB1-202ENST00000439561 THRAP3Q9Y2W1 955 aaKnown RBP9.77□□□□□ -0.84
COPB1-202ENST00000439561 USP15Q9Y4E8 981 aaPredicted RBP9.77□□□□□ -0.84
COPB1-202ENST00000439561 PCDHA1Q9Y5I3 950 aa9.77□□□□□ -0.84
COPB1-202ENST00000439561 MARF1Q9Y4F3 1742 aaKnown RBP9.77□□□□□ -0.85
COPB1-202ENST00000439561 DDX3XO00571 662 aaKnown RBP eCLIP9.77□□□□□ -0.855e-24■■■■□ 22.8
COPB1-202ENST00000439561 AKAP3O75969 853 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 BRAFP15056 766 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 NQO1P15559 274 aaKnown RBP9.77□□□□□ -0.85
COPB1-202ENST00000439561 RBM5P52756 815 aaKnown RBP eCLIP9.77□□□□□ -0.85
COPB1-202ENST00000439561 MXRA7P84157 204 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 XRCC4Q13426 336 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 HP1BP3Q5SSJ5 553 aaPredicted RBP9.77□□□□□ -0.85
COPB1-202ENST00000439561 ZNF804AQ7Z570 1209 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 NT5DC3Q86UY8 548 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 DDX23Q9BUQ8 820 aaKnown RBP9.77□□□□□ -0.85
COPB1-202ENST00000439561 PCIF1Q9H4Z3 704 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 METTL14Q9HCE5 456 aaKnown RBP9.77□□□□□ -0.85
COPB1-202ENST00000439561 SCN11AQ9UI33 1791 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 ABCB11O95342 1321 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 CFAP73A6NFT4 308 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 CYP11B2P19099 503 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 GBP1P32455 592 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 ADCY8P40145 1251 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 SATB1Q01826 763 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 PDIA5Q14554 519 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 MFSD14BQ5SR56 506 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 AP1ARQ63HQ0 302 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 SLC30A10Q6XR72 485 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 C1orf54Q8WWF1 131 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 ZBTB10Q96DT7 871 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 TGS1Q96RS0 853 aaKnown RBP9.77□□□□□ -0.85
COPB1-202ENST00000439561 GANQ9H2C0 597 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 ERVK-5Q9HDB9 667 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 PARP2Q9UGN5 583 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 SRP68Q9UHB9 627 aaKnown RBP9.77□□□□□ -0.85
COPB1-202ENST00000439561 GGA2Q9UJY4 613 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 TRPC6Q9Y210 931 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 C15orf41Q9Y2V0 281 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 DISP2A7MBM2 1401 aa9.77□□□□□ -0.85
COPB1-202ENST00000439561 PASKQ96RG2 1323 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 ANKRD62A6NC57 917 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 H0YGN5 161 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 RBAK-RBAKDNI3L0D1 243 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 RIMBP2O15034 1052 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 SMIM24O75264 130 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 DNAJC8O75937 253 aaPredicted RBP9.76□□□□□ -0.85
COPB1-202ENST00000439561 UFL1O94874 794 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 KRT15P19012 456 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 ERFP50548 548 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 KCNA1Q09470 495 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 TPTE2Q6XPS3 522 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 IRF2BP2Q7Z5L9 587 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 FBXO33Q7Z6M2 555 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 LMNTD2Q8IXW0 634 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 C3orf20Q8ND61 904 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 RBM46Q8TBY0 533 aaKnown RBP9.76□□□□□ -0.85
COPB1-202ENST00000439561 DNAJC19Q96DA6 116 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 HOOK2Q96ED9 719 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 REEP2Q9BRK0 252 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 DHX36Q9H2U1 1008 aaKnown RBP9.76□□□□□ -0.85
COPB1-202ENST00000439561 PNMA3Q9UL41 463 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 ZBTB21Q9ULJ3 1066 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 NFS1Q9Y697 457 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 BAZ2AQ9UIF9 1905 aaKnown RBP9.76□□□□□ -0.85
COPB1-202ENST00000439561 KIF1AQ12756 1690 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 POC1B-GALNT4F8VUJ3 575 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 FTLP02792 175 aaPredicted RBP9.76□□□□□ -0.85
COPB1-202ENST00000439561 DLATP10515 647 aaKnown RBP9.76□□□□□ -0.85
COPB1-202ENST00000439561 EEF2P13639 858 aaKnown RBP9.76□□□□□ -0.85
COPB1-202ENST00000439561 ATP2A2P16615 1042 aaKnown RBP9.76□□□□□ -0.85
COPB1-202ENST00000439561 ATP5DP30049 168 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 NMT1P30419 496 aaKnown RBP9.76□□□□□ -0.85
COPB1-202ENST00000439561 PSMC6P62333 389 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 SEPT2Q15019 361 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 TMED2Q15363 201 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 GRIK5Q16478 980 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 PPP2R5EQ16537 467 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 SPATA21Q7Z572 469 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 ERICH1Q86X53 443 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 BTBD6Q96KE9 485 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 FAM118BQ9BPY3 351 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 CCDC77Q9BR77 488 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 MTFR1LQ9H019 292 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 UBE2TQ9NPD8 197 aaPredicted RBP9.76□□□□□ -0.85
COPB1-202ENST00000439561 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.76□□□□□ -0.851e-34■■■■□ 19.8
COPB1-202ENST00000439561 ALG6Q9Y672 507 aa9.76□□□□□ -0.85
COPB1-202ENST00000439561 M0R2N6 131 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms