RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 ECM2O94769 699 aaPredicted RBP10.36□□□□□ -0.75
CUX1-206ENST00000437600 GFPT2O94808 682 aa10.36□□□□□ -0.75
CUX1-206ENST00000437600 FAM13AO94988 1023 aa10.36□□□□□ -0.75
CUX1-206ENST00000437600 KCNA4P22459 653 aa10.36□□□□□ -0.75
CUX1-206ENST00000437600 CIITAP33076 1130 aa10.36□□□□□ -0.75
CUX1-206ENST00000437600 BACE1P56817 501 aa10.36□□□□□ -0.75
CUX1-206ENST00000437600 LLGL1Q15334 1064 aa10.36□□□□□ -0.75
CUX1-206ENST00000437600 ARHGAP44Q17R89 818 aa10.36□□□□□ -0.75
CUX1-206ENST00000437600 ODR4Q5SWX8 454 aa10.36□□□□□ -0.75
CUX1-206ENST00000437600 TTC19Q6DKK2 380 aaPredicted RBP10.36□□□□□ -0.75
CUX1-206ENST00000437600 ZNF280CQ8ND82 737 aa10.36□□□□□ -0.75
CUX1-206ENST00000437600 UNC45AQ9H3U1 944 aa10.36□□□□□ -0.75
CUX1-206ENST00000437600 SLC38A10Q9HBR0 1119 aa10.36□□□□□ -0.75
CUX1-206ENST00000437600 CEP72Q9P209 647 aa10.36□□□□□ -0.75
CUX1-206ENST00000437600 SNCAIPQ9Y6H5 919 aa10.36□□□□□ -0.75
CUX1-206ENST00000437600 ASTN1O14525 1302 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 TESPA1A2RU30 521 aaPredicted RBP10.35□□□□□ -0.75
CUX1-206ENST00000437600 FAM20AQ96MK3 541 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 ACP6Q9NPH0 428 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 KCNH7Q9NS40 1196 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 PPP1R9AQ9ULJ8 1098 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 USP20Q9Y2K6 914 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 PITPNM2Q9BZ72 1349 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 IRF6O14896 467 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 SERPING1P05155 500 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 ABCB4P21439 1286 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 CYP2C19P33261 490 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 GGCXP38435 758 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 SOX10P56693 466 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 SND1Q7KZF4 910 aaKnown RBP eCLIP10.35□□□□□ -0.75
CUX1-206ENST00000437600 IRF2BP2Q7Z5L9 587 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 ADAT2Q7Z6V5 191 aaKnown RBP10.35□□□□□ -0.75
CUX1-206ENST00000437600 KLHL7Q8IXQ5 586 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 LPAR1Q92633 364 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 NOX5Q96PH1 765 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 NAP1L4Q99733 375 aaKnown RBP10.35□□□□□ -0.75
CUX1-206ENST00000437600 GPRC5CQ9NQ84 441 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 SEPT11Q9NVA2 429 aaKnown RBP10.35□□□□□ -0.75
CUX1-206ENST00000437600 TELO2Q9Y4R8 837 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 PTPRFP10586 1907 aa10.35□□□□□ -0.75
CUX1-206ENST00000437600 COL11A1P12107 1806 aaPredicted RBP10.34□□□□□ -0.75
CUX1-206ENST00000437600 VWA5AO00534 786 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 PSMD10O75832 226 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 DLG4P78352 724 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 MRPS9P82933 396 aaKnown RBP10.34□□□□□ -0.75
CUX1-206ENST00000437600 CDK17Q00537 523 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 BAATQ14032 418 aaPredicted RBP10.34□□□□□ -0.75
CUX1-206ENST00000437600 SNRNP48Q6IEG0 339 aaKnown RBP10.34□□□□□ -0.75
CUX1-206ENST00000437600 FOXR1Q6PIV2 292 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 MOXD1Q6UVY6 613 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 CCNI2Q6ZMN8 369 aaPredicted RBP10.34□□□□□ -0.75
CUX1-206ENST00000437600 EHBP1Q8NDI1 1231 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 SYTL5Q8TDW5 730 aaPredicted RBP10.34□□□□□ -0.75
CUX1-206ENST00000437600 HNRNPLLQ8WVV9 542 aaKnown RBP10.34□□□□□ -0.75
CUX1-206ENST00000437600 SLC35C1Q96A29 364 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 AP1M1Q9BXS5 423 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 GCNT4Q9P109 453 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 ZNF112Q9UJU3 913 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 SYNPO2Q9UMS6 1093 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 ATP9AO75110 1047 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 AFPP02771 609 aaKnown RBP10.34□□□□□ -0.75
CUX1-206ENST00000437600 GLI1P08151 1106 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 CYP3A4P08684 503 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 SEMA3FQ13275 785 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 ASIC2Q16515 512 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 CBWD6Q4V339 395 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 CBWD3Q5JTY5 395 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 CBWD5Q5RIA9 395 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 TREML2Q5T2D2 321 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 C1orf186Q6ZWK4 172 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 ALS2CR12Q96Q35 445 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 RMDN3Q96TC7 470 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 LXNQ9BS40 222 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 GANQ9H2C0 597 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 RNF146Q9NTX7 359 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 WDR90Q96KV7 1748 aa10.34□□□□□ -0.75
CUX1-206ENST00000437600 FRMD3A2A2Y4 597 aa10.33□□□□□ -0.75
CUX1-206ENST00000437600 GOLGA8IPA6NC78 632 aa10.33□□□□□ -0.75
CUX1-206ENST00000437600 GOLGA8JA6NMD2 632 aa10.33□□□□□ -0.75
CUX1-206ENST00000437600 TBX3O15119 743 aa10.33□□□□□ -0.75
CUX1-206ENST00000437600 SLC18A3Q16572 532 aa10.33□□□□□ -0.75
CUX1-206ENST00000437600 RNF207Q6ZRF8 634 aa10.33□□□□□ -0.75
CUX1-206ENST00000437600 PNMA8AQ86V59 439 aaPredicted RBP10.33□□□□□ -0.75
CUX1-206ENST00000437600 FAM178BQ8IXR5 827 aa10.33□□□□□ -0.75
CUX1-206ENST00000437600 SYCP3Q8IZU3 236 aa10.33□□□□□ -0.75
CUX1-206ENST00000437600 CEP63Q96MT8 703 aa10.33□□□□□ -0.75
CUX1-206ENST00000437600 SELENOOQ9BVL4 669 aa10.33□□□□□ -0.75
CUX1-206ENST00000437600 CSADQ9Y600 493 aa10.33□□□□□ -0.75
CUX1-206ENST00000437600 KCNK3O14649 394 aa10.33□□□□□ -0.76
CUX1-206ENST00000437600 EYA4O95677 639 aa10.33□□□□□ -0.76
CUX1-206ENST00000437600 SYF2O95926 243 aaKnown RBP10.33□□□□□ -0.76
CUX1-206ENST00000437600 FAM153BP0C7A2 387 aa10.33□□□□□ -0.76
CUX1-206ENST00000437600 GUCY2FP51841 1108 aa10.33□□□□□ -0.76
CUX1-206ENST00000437600 NPEPPSP55786 919 aa10.33□□□□□ -0.76
CUX1-206ENST00000437600 ITGB3BPQ13352 177 aaPredicted RBP10.33□□□□□ -0.76
CUX1-206ENST00000437600 TUBB2AQ13885 445 aa10.33□□□□□ -0.76
CUX1-206ENST00000437600 FAM153CQ494X1 144 aa10.33□□□□□ -0.76
CUX1-206ENST00000437600 HSP90B2PQ58FF3 399 aa10.33□□□□□ -0.76
CUX1-206ENST00000437600 DPY19L2P1Q6NXN4 242 aa10.33□□□□□ -0.76
CUX1-206ENST00000437600 ALKBH5Q6P6C2 394 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms