RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 WDR78Q5VTH9 848 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 ASAP3Q8TDY4 903 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 TSG101Q99816 390 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 SLCO1B3Q9NPD5 702 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 TXLNGQ9NUQ3 528 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 ZNF232Q9UNY5 417 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 DIP2CQ9Y2E4 1556 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 H2AFZP0C0S5 128 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 MYBPC3Q14896 1274 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 H2AFVQ71UI9 128 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 CADPS2Q86UW7 1296 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 PLEKHG4BQ96PX9 1271 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 CRAMP1Q96RY5 1269 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 CNTNAP5Q8WYK1 1306 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 FAM196BA6NMK8 535 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 KRT36O76013 467 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 SKIP12755 728 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 USP46P62068 366 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 DYNC1I2Q13409 638 aaKnown RBP8.03□□□□□ -1.12
CPSF6-202ENST00000435070 EXOC3L4Q17RC7 722 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 ISLR2Q6UXK2 745 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 SV2BQ7L1I2 683 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 EIF1ADQ8N9N8 165 aaKnown RBP8.03□□□□□ -1.12
CPSF6-202ENST00000435070 RBBP8NLQ8NC74 664 aaPredicted RBP8.03□□□□□ -1.12
CPSF6-202ENST00000435070 LRRC37BQ96QE4 947 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 MTRF1LQ9UGC7 380 aaKnown RBP8.03□□□□□ -1.12
CPSF6-202ENST00000435070 NAGPAQ9UK23 515 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 HNRNPRO43390 633 aaKnown RBP8.03□□□□□ -1.12
CPSF6-202ENST00000435070 TRAPPC10P48553 1259 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 AMPD3Q01432 767 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 C1QTNF12Q5T7M4 302 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 COL23A1Q86Y22 540 aaPredicted RBP8.03□□□□□ -1.12
CPSF6-202ENST00000435070 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.03□□□□□ -1.125e-6■□□□□ 9.1
CPSF6-202ENST00000435070 RPTORQ8N122 1335 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 CYP27B1O15528 508 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 COQ9O75208 318 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 RPL21P46778 160 aaKnown RBP8.03□□□□□ -1.12
CPSF6-202ENST00000435070 KLRC3Q07444 240 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 CEP128Q6ZU80 1094 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 IQCDQ96DY2 449 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 PHACTR1Q9C0D0 580 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 PPP1R9AQ9ULJ8 1098 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 CHMP2BQ9UQN3 213 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.03□□□□□ -1.12
CPSF6-202ENST00000435070 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.03□□□□□ -1.12
CPSF6-202ENST00000435070 CAPN9O14815 690 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 SPAG7O75391 227 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 NUDT17P0C025 328 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 RASA1P20936 1047 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 CCNG1P51959 295 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 GJB7Q6PEY0 223 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 ZDHHC24Q6UX98 284 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 DSTYKQ6XUX3 929 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.03□□□□□ -1.12
CPSF6-202ENST00000435070 CCSER1Q9C0I3 900 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 NT5C3AQ9H0P0 336 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 ZDHHC18Q9NUE0 388 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 COL4A3BPQ9Y5P4 624 aa8.03□□□□□ -1.12
CPSF6-202ENST00000435070 PCDH11XQ9BZA7 1347 aa8.02□□□□□ -1.12
CPSF6-202ENST00000435070 TSPOAP1O95153 1857 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 RBAK-RBAKDNI3L0D1 243 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 SPATA31D3P0C874 917 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 GRM1Q13255 1194 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 IRGCQ6NXR0 463 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 SPATA31D4Q6ZUB0 917 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 LRRC57Q8N9N7 239 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 CALML4Q96GE6 196 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 STOML1Q9UBI4 398 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 OAS1P00973 400 aaKnown RBP8.02□□□□□ -1.13
CPSF6-202ENST00000435070 BCAMP50895 628 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 DYNLL1P63167 89 aaKnown RBP8.02□□□□□ -1.13
CPSF6-202ENST00000435070 SGSM1Q2NKQ1 1148 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 RBM26Q5T8P6 1007 aaKnown RBP8.02□□□□□ -1.13
CPSF6-202ENST00000435070 OLFML2BQ68BL8 750 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 DUPD1Q68J44 220 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 CGB2Q6NT52 195 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 LRRC55Q6ZSA7 311 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 NAP1L3Q99457 506 aaPredicted RBP8.02□□□□□ -1.13
CPSF6-202ENST00000435070 POP1Q99575 1024 aaKnown RBP8.02□□□□□ -1.13
CPSF6-202ENST00000435070 VAT1LQ9HCJ6 419 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 NKIRAS1Q9NYS0 192 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 KIAA0391O15091 583 aaKnown RBP8.02□□□□□ -1.13
CPSF6-202ENST00000435070 GJB6O95452 261 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 PHKG2P15735 406 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 ACADSP16219 412 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 TRIP13Q15645 432 aaPredicted RBP8.02□□□□□ -1.13
CPSF6-202ENST00000435070 DCAF17Q5H9S7 520 aaPredicted RBP8.02□□□□□ -1.13
CPSF6-202ENST00000435070 GALNT17Q6IS24 598 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 ZNF333Q96JL9 665 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 STMN4Q9H169 189 aaPredicted RBP8.02□□□□□ -1.13
CPSF6-202ENST00000435070 TMOD2Q9NZR1 351 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 TECPR2O15040 1411 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 ANKRD63C9JTQ0 380 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 VSTM1Q6UX27 236 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 NT5DC3Q86UY8 548 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 CCDC105Q8IYK2 499 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 BICD1Q96G01 975 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 PWWP2AQ96N64 755 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 CARD9Q9H257 536 aa8.02□□□□□ -1.13
CPSF6-202ENST00000435070 ETNK2Q9NVF9 386 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms