RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 IKZF4Q9H2S9 585 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 RABGAP1Q9Y3P9 1069 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 PCDHB13Q9Y5F0 798 aa11.67□□□□□ -0.54
CUX1-205ENST00000425244 ZNF536O15090 1300 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 FAM170AA1A519 330 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 C19orf81C9J6K1 198 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 RBAK-RBAKDNI3L0D1 243 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 CALUO43852 315 aaPredicted RBP11.66□□□□□ -0.54
CUX1-205ENST00000425244 AKAP3O75969 853 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 FOSP01100 380 aaPredicted RBP11.66□□□□□ -0.54
CUX1-205ENST00000425244 AFPP02771 609 aaKnown RBP11.66□□□□□ -0.54
CUX1-205ENST00000425244 ACTN2P35609 894 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 CASP4P49662 377 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 MARSP56192 900 aaKnown RBP11.66□□□□□ -0.54
CUX1-205ENST00000425244 CFAP221Q4G0U5 840 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 MUM1L1Q5H9M0 696 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 AFAP1L1Q8TED9 768 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 OPTNQ96CV9 577 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 FAM20AQ96MK3 541 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 RIPK3Q9Y572 518 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 SCN4AP35499 1836 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 GCOM1H8Y6P7 765 aaPredicted RBP11.66□□□□□ -0.54
CUX1-205ENST00000425244 VWA5AO00534 786 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 TBX3O15119 743 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 ZBED4O75132 1171 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 NR3C1P04150 777 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 ICAM1P05362 532 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 POLR2MP0CAP2 368 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 AARSP49588 968 aaKnown RBP eCLIP11.66□□□□□ -0.542e-6■■■■■ 51.2
CUX1-205ENST00000425244 PTK2Q05397 1052 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 NAB2Q15742 525 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 EXOC3L4Q17RC7 722 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 NOL9Q5SY16 702 aaKnown RBP11.66□□□□□ -0.54
CUX1-205ENST00000425244 NSMFQ6X4W1 530 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 ARMC9Q7Z3E5 817 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 GOLGA5Q8TBA6 731 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 AENQ8WTP8 325 aaKnown RBP11.66□□□□□ -0.54
CUX1-205ENST00000425244 SLC38A10Q9HBR0 1119 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 STIM2Q9P246 746 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 VAV3Q9UKW4 847 aa11.66□□□□□ -0.54
CUX1-205ENST00000425244 MRPL11Q9Y3B7 192 aaKnown RBP11.66□□□□□ -0.54
CUX1-205ENST00000425244 UCHL3P15374 230 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 NOP2P46087 812 aaKnown RBP11.65□□□□□ -0.54
CUX1-205ENST00000425244 COG2Q14746 738 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 SNRNP48Q6IEG0 339 aaKnown RBP11.65□□□□□ -0.54
CUX1-205ENST00000425244 GOLPH3Q9H4A6 298 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 ESYT3A0FGR9 886 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 ZBTB39O15060 712 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 FAM13AO94988 1023 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 EPB41P11171 864 aaKnown RBP11.65□□□□□ -0.54
CUX1-205ENST00000425244 SKIDA1Q1XH10 827 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 GJB7Q6PEY0 223 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 ZNF571Q7Z3V5 609 aaPredicted RBP11.65□□□□□ -0.54
CUX1-205ENST00000425244 FRMD5Q7Z6J6 570 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 KSR1Q8IVT5 923 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 MYCT1Q8N699 235 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 IFT81Q8WYA0 676 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 SLC10A4Q96EP9 437 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 AIPL1Q9NZN9 384 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 TSKSQ9UJT2 592 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 TRAF3IP3Q9Y228 551 aa11.65□□□□□ -0.54
CUX1-205ENST00000425244 OTOFQ9HC10 1997 aa11.65□□□□□ -0.55
CUX1-205ENST00000425244 SLC26A4O43511 780 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 PLA2G6O60733 806 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 PON1P27169 355 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 NMT1P30419 496 aaKnown RBP11.64□□□□□ -0.55
CUX1-205ENST00000425244 ZNF572Q7Z3I7 529 aaPredicted RBP11.64□□□□□ -0.55
CUX1-205ENST00000425244 ERO1BQ86YB8 467 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 PAGR1Q9BTK6 254 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 TSPYL1Q9H0U9 437 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 GCNT4Q9P109 453 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 BRCA2P51587 3418 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 ASTN1O14525 1302 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 PHIPQ8WWQ0 1821 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 ZSCAN5CA6NGD5 496 aaPredicted RBP11.64□□□□□ -0.55
CUX1-205ENST00000425244 PDXKO00764 312 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 CELF2O95319 508 aaKnown RBP11.64□□□□□ -0.55
CUX1-205ENST00000425244 RPL13P26373 211 aaKnown RBP11.64□□□□□ -0.55
CUX1-205ENST00000425244 ITIH3Q06033 890 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 ZC2HC1CQ53FD0 456 aaPredicted RBP11.64□□□□□ -0.55
CUX1-205ENST00000425244 LRCH2Q5VUJ6 765 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 MCTP2Q6DN12 878 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 CATSPERGQ6ZRH7 1159 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 EPM2AIP1Q7L775 607 aaPredicted RBP11.64□□□□□ -0.55
CUX1-205ENST00000425244 ZC3H3Q8IXZ2 948 aaKnown RBP11.64□□□□□ -0.55
CUX1-205ENST00000425244 RBM46Q8TBY0 533 aaKnown RBP11.64□□□□□ -0.55
CUX1-205ENST00000425244 DYDC2Q96IM9 177 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 KRT12Q99456 494 aa11.64□□□□□ -0.55
CUX1-205ENST00000425244 TYW1Q9NV66 732 aaKnown RBP11.64□□□□□ -0.55
CUX1-205ENST00000425244 CWC15Q9P013 229 aaKnown RBP11.64□□□□□ -0.55
CUX1-205ENST00000425244 GRID2IPA4D2P6 1211 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 AGPSO00116 658 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 EYA4O95677 639 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 GUCY2DQ02846 1103 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 TMEM132BQ14DG7 1078 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 RINT1Q6NUQ1 792 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 FOXR1Q6PIV2 292 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 TAF4BQ92750 862 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 GOLGA6CA6NDK9 693 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 KCNK3O14649 394 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms