RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 BLIDQ8IZY5 108 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 EFHBQ8N7U6 833 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 FAM167AQ96KS9 214 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 RIT2Q99578 217 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 APOL5Q9BWW9 433 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 SH3GLB2Q9NR46 395 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 SEPT9Q9UHD8 586 aaPredicted RBP13.05□□□□□ -0.32
USP4-204ENST00000416417 CEP131Q9UPN4 1083 aa13.05□□□□□ -0.32
USP4-204ENST00000416417 FNDC1Q4ZHG4 1894 aaPredicted RBP13.05□□□□□ -0.32
USP4-204ENST00000416417 M0R2N6 131 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 CPLX1O14810 134 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 SLC37A4O43826 429 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 STBD1O95210 358 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 ALADP13716 330 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 EIF4BP23588 611 aaKnown RBP13.04□□□□□ -0.32
USP4-204ENST00000416417 TBC1D8BQ0IIM8 1120 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 INF2Q27J81 1249 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 ODR4Q5SWX8 454 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 ECHDC2Q86YB7 292 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 RNF135Q8IUD6 432 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 NLRP7Q8WX94 980 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 TLR9Q9NR96 1032 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 PDRG1Q9NUG6 133 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 PRKAG3Q9UGI9 489 aa13.04□□□□□ -0.32
USP4-204ENST00000416417 DDX11L8A8MPP1 907 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 PRR33A8MZF0 331 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 DEXIO95424 95 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 DARSP14868 501 aaKnown RBP13.03□□□□□ -0.32
USP4-204ENST00000416417 TMOD1P28289 359 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 JAK3P52333 1124 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 TARBP2Q15633 366 aaKnown RBP13.03□□□□□ -0.32
USP4-204ENST00000416417 CSPP1Q1MSJ5 1256 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 Q4G0T1 1027 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 CLLU1OSQ5K130 101 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 PLA2G4FQ68DD2 849 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 LLGL2Q6P1M3 1020 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 KSR1Q8IVT5 923 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 ETNPPLQ8TBG4 499 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 HELQQ8TDG4 1101 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 PPP2R3CQ969Q6 453 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 CEP89Q96ST8 783 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 AAASQ9NRG9 546 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 USP15Q9Y4E8 981 aaPredicted RBP13.03□□□□□ -0.32
USP4-204ENST00000416417 MYH9P35579 1960 aaKnown RBP13.03□□□□□ -0.32
USP4-204ENST00000416417 A0A087WZ62 844 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 HIDE1A8MVS5 230 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 NT5C1B-RDH14C9J2C7 533 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 EML1O00423 815 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 ZSCAN20P17040 1043 aaPredicted RBP13.03□□□□□ -0.32
USP4-204ENST00000416417 LAG3P18627 525 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 SFNP31947 248 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 LETM2Q2VYF4 491 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 KCNT2Q6UVM3 1135 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 ZNF579Q8NAF0 562 aaKnown RBP13.03□□□□□ -0.32
USP4-204ENST00000416417 SMRP1Q8NCR6 262 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 OXER1Q8TDS5 423 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 ZNF274Q96GC6 653 aaPredicted RBP13.03□□□□□ -0.32
USP4-204ENST00000416417 FDXACB1Q9BRP7 624 aaPredicted RBP13.03□□□□□ -0.32
USP4-204ENST00000416417 TMEM117Q9H0C3 514 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 ELAC1Q9H777 363 aaKnown RBP13.03□□□□□ -0.32
USP4-204ENST00000416417 BMP2KQ9NSY1 1161 aaPredicted RBP13.03□□□□□ -0.32
USP4-204ENST00000416417 CDH22Q9UJ99 828 aa13.03□□□□□ -0.32
USP4-204ENST00000416417 CYP3A7-CYP3A51PA0A087WV96 503 aa13.02□□□□□ -0.33
USP4-204ENST00000416417 FSCN2O14926 492 aa13.02□□□□□ -0.33
USP4-204ENST00000416417 EYA4O95677 639 aa13.02□□□□□ -0.33
USP4-204ENST00000416417 ATF7P17544 494 aaPredicted RBP13.02□□□□□ -0.33
USP4-204ENST00000416417 CYP3A7P24462 503 aa13.02□□□□□ -0.33
USP4-204ENST00000416417 SCRN1Q12765 414 aa13.02□□□□□ -0.33
USP4-204ENST00000416417 NONOQ15233 471 aaKnown RBP eCLIP13.02□□□□□ -0.33
USP4-204ENST00000416417 DUSP6Q16828 381 aa13.02□□□□□ -0.33
USP4-204ENST00000416417 B3GNT9Q6UX72 402 aa13.02□□□□□ -0.33
USP4-204ENST00000416417 HFE2Q6ZVN8 426 aa13.02□□□□□ -0.33
USP4-204ENST00000416417 ABI1Q8IZP0 508 aa13.02□□□□□ -0.33
USP4-204ENST00000416417 MRPS27Q92552 414 aaKnown RBP13.02□□□□□ -0.33
USP4-204ENST00000416417 LPPQ93052 612 aa13.02□□□□□ -0.33
USP4-204ENST00000416417 TCF25Q9BQ70 676 aa13.02□□□□□ -0.33
USP4-204ENST00000416417 ENTPD7Q9NQZ7 604 aa13.02□□□□□ -0.33
USP4-204ENST00000416417 DDX25Q9UHL0 483 aaKnown RBP13.02□□□□□ -0.33
USP4-204ENST00000416417 FAM205CA6NFA0 338 aa13.01□□□□□ -0.33
USP4-204ENST00000416417 MEIS3P2A8K0S8 358 aa13.01□□□□□ -0.33
USP4-204ENST00000416417 SP100P23497 879 aaPredicted RBP13.01□□□□□ -0.33
USP4-204ENST00000416417 NPEPPSP55786 919 aa13.01□□□□□ -0.33
USP4-204ENST00000416417 UBE3AQ05086 875 aa13.01□□□□□ -0.33
USP4-204ENST00000416417 COASYQ13057 564 aa13.01□□□□□ -0.33
USP4-204ENST00000416417 XKR3Q5GH77 459 aa13.01□□□□□ -0.33
USP4-204ENST00000416417 EARS2Q5JPH6 523 aaKnown RBP13.01□□□□□ -0.33
USP4-204ENST00000416417 ANO5Q75V66 913 aa13.01□□□□□ -0.33
USP4-204ENST00000416417 ZNF598Q86UK7 904 aaKnown RBP13.01□□□□□ -0.33
USP4-204ENST00000416417 RHPN2Q8IUC4 686 aa13.01□□□□□ -0.33
USP4-204ENST00000416417 DAGLBQ8NCG7 672 aa13.01□□□□□ -0.33
USP4-204ENST00000416417 RPGRIP1Q96KN7 1286 aa13.01□□□□□ -0.33
USP4-204ENST00000416417 MBOAT7Q96N66 472 aa13.01□□□□□ -0.33
USP4-204ENST00000416417 ZNF558Q96NG5 402 aa13.01□□□□□ -0.33
USP4-204ENST00000416417 NIFKQ9BYG3 293 aaKnown RBP13.01□□□□□ -0.33
USP4-204ENST00000416417 SUCLA2Q9P2R7 463 aaPredicted RBP13.01□□□□□ -0.33
USP4-204ENST00000416417 WRAP73Q9P2S5 460 aaPredicted RBP13.01□□□□□ -0.33
USP4-204ENST00000416417 TPCN1Q9ULQ1 816 aa13.01□□□□□ -0.33
USP4-204ENST00000416417 WDR81Q562E7 1941 aa13□□□□□ -0.33
USP4-204ENST00000416417 CA8P35219 290 aa13□□□□□ -0.33
USP4-204ENST00000416417 TECP42680 631 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms